PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g17430
Common NameGSCOC_T00016325001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 539aa    MW: 58846.3 Da    PI: 5.9939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g17430genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.39.1e-16345391455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Cc01_g17430 345 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 391
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.044341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-21344419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-16344395No hitNo description
Gene3DG3DSA:4.10.280.101.5E-20345404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-13345391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-17347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MNHCVPDFEM DDDYGIPTSS SINASTTARP KKPAIGEEEI MELLWQNGQV VFQSQNQRSF  60
KKSPNRGGEP DQLHQSGASR EIPSILENDN LSAAAPPQHQ QQQLFMQEDE MASWLHYPLD  120
DSSFDRDLYS DLLYPPPPSA STTTTMTPTP SVPPRELRTT IVEIRPPPAV IPPRPPVPPP  180
SKGTYPIEAA APRLQNFMHF SRLPKSRNES GYTRELTVVD SNETQTTVPE SRVPEGDVRC  240
GAVSCTAAAA TSAAARDLAT TACELTVTSS PGASGGSVSA TAEPHHRPPT SIHKPSTSGV  300
EDRKRKGRET EETDCPSEDI EFESADAKRQ ARGSTSTKRS RAAEVHNLSE RRRRDRINEK  360
MRALQELIPR CNKSDKASML DEAIEYLKSL QLQVQLMSMG CGMLPMMYPS VQQYMPAMGM  420
GMGMGMGMGM DLGMNRPVMP YPSFIPGSGM PSPAVAANMG PRFPMPAFHM QPVPVPDSSR  480
IQASNQLDPM LNSLVTPNPN QPRVPNFADP YQQFIGLHQA QIPLPQAKSS GSTAQQAE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349354ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR7036661e-83KR703666.1 Catharanthus roseus phytochrome interacting factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027163807.10.0transcription factor PIF1
TrEMBLA0A068U8960.0A0A068U896_COFCA; Uncharacterized protein
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.19e-53phytochrome interacting factor 3-like 5