PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g16690
Common NameGSCOC_T00016410001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 231aa    MW: 26382.9 Da    PI: 10.3055
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g16690genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.56.1e-12104147151
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                  +  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  Cc01_g16690 104 CVMRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 147
                  568***99..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-6104148IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-8105150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-6107152IPR001471AP2/ERF domain
SMARTSM003801.8E-4107162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVSIRRRKLL GSGRCNPFLA PLPKFSENGY TPEIRMQNTK PFSVHPIPSI DVDETKEKLS  60
PLKASGSSNV PACTELKEQH TRQFPEVKRR KRHRRKHFEN QEQCVMRGVY FKNMKWQAAI  120
KVDKKQIHLG TVGSQEEAAR LYDRAAFMCG REPNFELSEE EKQELRNFKW DEFLAITRSA  180
INHKKHHRRN GAGSRRKSES MMLKRALESE EGGNGLSGSE DTAEPDTSGS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027114441.11e-173ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_027114450.11e-173ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A068U6G51e-171A0A068U6G5_COFCA; Uncharacterized protein
STRINGXP_009758059.13e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62462433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-43ERF family protein