PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g15980 | ||||||||
Common Name | GSCOC_T00016496001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 183aa MW: 21304.4 Da PI: 8.9504 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86 | 5.7e-27 | 11 | 100 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF +r+++ ++s+ +++i +r++ C+k+g+ + k++ r++r++tr gCka++ vk +k+gkw+vt+++++H+H+l+ Cc01_g15980 11 EFYDDYARHLGFVMRIDQCRRSEVDKRILSRRLSCNKQGYYVKMKDQYGPVRKPRSSTREGCKAMMLVKVNKSGKWVVTRFVKDHTHPLV 100 6****************************************9999999****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.9E-25 | 11 | 100 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MEFDSEDAAK EFYDDYARHL GFVMRIDQCR RSEVDKRILS RRLSCNKQGY YVKMKDQYGP 60 VRKPRSSTRE GCKAMMLVKV NKSGKWVVTR FVKDHTHPLV ASSRTCRTAM DHKDRKIQEL 120 TLELERQDKL CNLYHEQIIT FLQSVEEETG LLSTKIEAAV KNVMEMEAEA KQQSNLQQAH 180 LQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027113305.1 | 1e-135 | protein FAR1-RELATED SEQUENCE 2-like, partial | ||||
TrEMBL | A0A068U8P2 | 1e-134 | A0A068U8P2_COFCA; Uncharacterized protein | ||||
STRING | XP_009779434.1 | 4e-95 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-69 | FAR1 family protein |