PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g15970 | ||||||||
Common Name | GSCOC_T00016497001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 244aa MW: 27293.6 Da PI: 5.5174 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.1 | 2.7e-27 | 79 | 167 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YA++vGF vr+ + ++s+++g++ r++ C+k+g++ +++ + + +r+r + r gCka++ vk+ek+gkw+vt+++++HnH+l Cc01_g15970 79 KFYIDYARKVGFVVRIMQRRRSETDGRTLARRLGCNKQGFSPNNQGSVASGKRPRCSAREGCKATILVKMEKSGKWVVTRFVKDHNHPL 167 6**************************************************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.4E-25 | 79 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MSPAELIAYV DLDKEDRNRE EENNSEGKEG EDVVGEGNAE ELDANDVMDV DGNTGQLKDS 60 EVLEPYVGME FESEDAARKF YIDYARKVGF VVRIMQRRRS ETDGRTLARR LGCNKQGFSP 120 NNQGSVASGK RPRCSAREGC KATILVKMEK SGKWVVTRFV KDHNHPLIIS ARGVSNGVDK 180 DKKIEQLTLE LQRQDQLCTA YRNKLLNFLA SVEEQGEHLS SKINGVIENV KKIEAEIQKS 240 SCH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027113238.1 | 1e-180 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A068U715 | 1e-179 | A0A068U715_COFCA; Uncharacterized protein | ||||
STRING | XP_006492212.1 | 6e-98 | (Citrus sinensis) | ||||
STRING | evm.model.supercontig_8.54 | 1e-97 | (Carica papaya) | ||||
STRING | XP_006447971.1 | 6e-98 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-72 | FAR1 family protein |