PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g15370
Common NameGSCOC_T00016570001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 299aa    MW: 33196.8 Da    PI: 5.0393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g15370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.94e-21119169155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+++ +grW+AeIrdp++   rkr++lg+++t+eeAa  +++a+ kl+g
  Cc01_g15370 119 KKFRGVRQRP-WGRWAAEIRDPTK---RKRVWLGTYDTPEEAASVYDRAAVKLKG 169
                  59********.**********975...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-33119178No hitNo description
Gene3DG3DSA:3.30.730.101.6E-30120178IPR001471AP2/ERF domain
SMARTSM003809.3E-40120183IPR001471AP2/ERF domain
PfamPF008471.4E-13120169IPR001471AP2/ERF domain
PROSITE profilePS5103224.381120177IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23120179IPR016177DNA-binding domain
PRINTSPR003671.1E-9121132IPR001471AP2/ERF domain
PRINTSPR003671.1E-9143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEIGISPQSP MYSRQRVKFS EHVVTTNKPI DDRRSLTPSG QSLTVVRQKV VRIIYTDADA  60
TDSSDDEEET RNVRRVKRHV EEINFGPPPK TTKIEQPRNG KRSHQSLTPP AEPDVSSRKK  120
FRGVRQRPWG RWAAEIRDPT KRKRVWLGTY DTPEEAASVY DRAAVKLKGP DAVTNFPVES  180
IKETVGGTCQ SEKSSESATS EYVALSPTSV LRYDDATSQT ETEVSVGIGT SDAVSSATSV  240
LRGCDGLTPF GNFPFPEFDD LALGADFPLS WPPMEPSGKN YAEEFGEFDF DDFLVEVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19119178161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7435440.0KF743544.1 Coffea arabica ERF transcription factor 05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027091457.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A068U7790.0A0A068U779_COFCA; Uncharacterized protein
STRINGXP_009767000.13e-75(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-33cytokinin response factor 4