PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g15370 | ||||||||
Common Name | GSCOC_T00016570001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 33196.8 Da PI: 5.0393 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.9 | 4e-21 | 119 | 169 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +grW+AeIrdp++ rkr++lg+++t+eeAa +++a+ kl+g Cc01_g15370 119 KKFRGVRQRP-WGRWAAEIRDPTK---RKRVWLGTYDTPEEAASVYDRAAVKLKG 169 59********.**********975...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.09E-33 | 119 | 178 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 120 | 178 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.3E-40 | 120 | 183 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-13 | 120 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.381 | 120 | 177 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 120 | 179 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.1E-9 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEIGISPQSP MYSRQRVKFS EHVVTTNKPI DDRRSLTPSG QSLTVVRQKV VRIIYTDADA 60 TDSSDDEEET RNVRRVKRHV EEINFGPPPK TTKIEQPRNG KRSHQSLTPP AEPDVSSRKK 120 FRGVRQRPWG RWAAEIRDPT KRKRVWLGTY DTPEEAASVY DRAAVKLKGP DAVTNFPVES 180 IKETVGGTCQ SEKSSESATS EYVALSPTSV LRYDDATSQT ETEVSVGIGT SDAVSSATSV 240 LRGCDGLTPF GNFPFPEFDD LALGADFPLS WPPMEPSGKN YAEEFGEFDF DDFLVEVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 119 | 178 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF743544 | 0.0 | KF743544.1 Coffea arabica ERF transcription factor 05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027091457.1 | 0.0 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A068U779 | 0.0 | A0A068U779_COFCA; Uncharacterized protein | ||||
STRING | XP_009767000.1 | 3e-75 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 2e-33 | cytokinin response factor 4 |