PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g15300
Common NameGSCOC_T00016580001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 300aa    MW: 33666 Da    PI: 4.8179
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g15300genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-10153196548
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                  kr++r   NR +A rs +RK ++i +Leekvk+L ++   L  +
  Cc01_g15300 153 KRAKRIVANRHSAARSKERKAQYIVNLEEKVKTLNSQVALLNTR 196
                  9**********************************998655544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.3E-8149213IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.554151197IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.42E-9153205No hitNo description
PfamPF001707.3E-9153197IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.8E-8153203No hitNo description
CDDcd147035.56E-16154202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MNSTNPDEPN PATNTPPFLL FLETPNADMI SSPFKGSLDC AWTPELTVKT FDNDDDNVIV  60
DFDIDFDDDL FSVYMDVKKL EEKENDVNVG LDNHDVLQNG GGFSKTAIIT TQPRKQRQRR  120
GLKGCLVDEK RFVEPRKAMA PEELAELWAI DPKRAKRIVA NRHSAARSKE RKAQYIVNLE  180
EKVKTLNSQV ALLNTRLTTT QACTLETTEL VAEKSELRCQ LQTLESQTEQ IDAQNAALKL  240
EIQWLKAVTG ELDDPCHVCQ SESLQFPTSM STHQKPLLHN CQPSTLSPYL HVASPQPLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165173ARSKERKAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109531.11e-173bZIP transcription factor 18-like
TrEMBLA0A068U6A60.0A0A068U6A6_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.19e-31bZIP family protein