PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g13070

Common Name

GSCOC_T00028267001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 751aa MW: 84285.2 Da PI: 5.3855

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g13070	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355.2	1e-108	374	745	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l+ lL++cA+av+s d + ++lLar+++++s +gd m+Rla+yf+ AL+arla+++++ly + ++ s ++ l+ +++f+ + P+ k+s++ a Cc01_g13070 374 LRALLVQCAQAVASFDIRTSNELLARIRQHSSAHGDGMERLAHYFAIALEARLAGTGTTLYTDYRKRRIS---AADILNGYQMFVSAIPFKKVSNIFA 468 5789*******************************************************999888888...99******************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N+ I + ++g++r+HiiDf+i +G+QWp+L+q L+ Rpegpp l iTg++ p++g +e++eetg rLa+++e++gvpfef++ +ak++++++le+L Cc01_g13070 469 NKNIGKLAAGATRLHIIDFGILYGFQWPCLIQRLSVRPEGPPALCITGIDLPQPGlrPAERVEETGLRLARYCERFGVPFEFHP-IAKKWDTIKLEDL 565 ********************************************************************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++ +E+l+Vn++ +l +++de+v +s+rd+vL+l+k+++P++++ + + +ns+ F++rf eal ++s++fd++ea++ re+++r+ Ere+ +r Cc01_g13070 566 KINGDEVLVVNCMERLANVPDETVVENSPRDAVLNLIKRIRPNMFIQSVINGTYNSPFFVTRFREALFHFSSVFDMFEATVLRENQDRALFEREIYAR 663 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ nv+aceg+er+er et+++W+ r +aGF+++pl+++++k ++ ++ ++ + ++v+e+ +++++gWk+r ++S+W+ Cc01_g13070 664 DALNVIACEGTERVERPETYKQWQVRNVRAGFRQLPLDQEIVKIIRDRVKSHYHRDFSVDEDGKWMLQGWKGRVSQAISCWE 745 *************************************************999***********************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.421	348	725	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-106	374	745	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 751 aa Download sequence Send to blast
MDTLVEPFPF SGNMYDLNYR SMSAHHEQNE VDEYKFDRGS EDFSDASNGS PPPDASSPSG 60 SDGNPPVQGD SNDPMLKFIN EMLMEEDDLT NKPCMFHDCS ALLAAEKSFY DVLNEPKSGP 120 SFFSCYQNAE SPNDDSSQSC YSQSSVCSSS DVNPSVESNW VGNQMGLESA VIQPSHVNLV 180 PQSILLSNQQ LLSSTNDFLD AAHRLDESWM SLLRMSDSSS QRPLDLKAWG SKGDVYGLLP 240 QGDSFSNSTF ESQNNTSNAA AVVEKSVRYH SSNGPSSKKN HGRDDSDDAE EHRSNKQLAS 300 SADESVPLER YDNVLLCPNL NPHLQPEPVF SSSEKALKDE ARNKLQQTER SKASTRGRPR 360 GGKKQGTKRE VVDLRALLVQ CAQAVASFDI RTSNELLARI RQHSSAHGDG MERLAHYFAI 420 ALEARLAGTG TTLYTDYRKR RISAADILNG YQMFVSAIPF KKVSNIFANK NIGKLAAGAT 480 RLHIIDFGIL YGFQWPCLIQ RLSVRPEGPP ALCITGIDLP QPGLRPAERV EETGLRLARY 540 CERFGVPFEF HPIAKKWDTI KLEDLKINGD EVLVVNCMER LANVPDETVV ENSPRDAVLN 600 LIKRIRPNMF IQSVINGTYN SPFFVTRFRE ALFHFSSVFD MFEATVLREN QDRALFEREI 660 YARDALNVIA CEGTERVERP ETYKQWQVRN VRAGFRQLPL DQEIVKIIRD RVKSHYHRDF 720 SVDEDGKWML QGWKGRVSQA ISCWEPVDEQ *

Sequence ? help Back to Top

Protein Sequence Length: 751 aa Download sequence Send to blast

MDTLVEPFPF SGNMYDLNYR SMSAHHEQNE VDEYKFDRGS EDFSDASNGS PPPDASSPSG  60
SDGNPPVQGD SNDPMLKFIN EMLMEEDDLT NKPCMFHDCS ALLAAEKSFY DVLNEPKSGP  120
SFFSCYQNAE SPNDDSSQSC YSQSSVCSSS DVNPSVESNW VGNQMGLESA VIQPSHVNLV  180
PQSILLSNQQ LLSSTNDFLD AAHRLDESWM SLLRMSDSSS QRPLDLKAWG SKGDVYGLLP  240
QGDSFSNSTF ESQNNTSNAA AVVEKSVRYH SSNGPSSKKN HGRDDSDDAE EHRSNKQLAS  300
SADESVPLER YDNVLLCPNL NPHLQPEPVF SSSEKALKDE ARNKLQQTER SKASTRGRPR  360
GGKKQGTKRE VVDLRALLVQ CAQAVASFDI RTSNELLARI RQHSSAHGDG MERLAHYFAI  420
ALEARLAGTG TTLYTDYRKR RISAADILNG YQMFVSAIPF KKVSNIFANK NIGKLAAGAT  480
RLHIIDFGIL YGFQWPCLIQ RLSVRPEGPP ALCITGIDLP QPGLRPAERV EETGLRLARY  540
CERFGVPFEF HPIAKKWDTI KLEDLKINGD EVLVVNCMER LANVPDETVV ENSPRDAVLN  600
LIKRIRPNMF IQSVINGTYN SPFFVTRFRE ALFHFSSVFD MFEATVLREN QDRALFEREI  660
YARDALNVIA CEGTERVERP ETYKQWQVRN VRAGFRQLPL DQEIVKIIRD RVKSHYHRDF  720
SVDEDGKWML QGWKGRVSQA ISCWEPVDEQ *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	7e-41	363	746	7	379	Protein SCARECROW
5b3h_D	7e-41	363	746	7	379	Protein SCARECROW
5hyz_A	7e-41	378	744	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027109326.1	0.0	scarecrow-like protein 30
TrEMBL	A0A068UKK8	0.0	A0A068UKK8_COFCA; Uncharacterized protein
STRING	XP_008222385.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-175	SCARECROW-like 14