PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g13060
Common NameGSCOC_T00028266001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 750aa    MW: 83723.4 Da    PI: 4.98
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g13060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.48.7e-1163757461373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL++cA+ v+++d++ a++ L+++++++sp+gd+ qRla+ f+++L+arla++++e+y+al++++ s    +e+l+a++++  ++P+ k+s + a
  Cc01_g13060 375 LRTLLISCAQSVANDDQRTAREQLKQIRQHSSPSGDACQRLASIFANGLEARLAGTGTEIYAALASKRIS---AAEKLKAYQVYLSACPFKKISIFFA 469
                  6789************************************************************999999...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I+  ++ ++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg+++p++g   +e++eetg+rLa+++e+++vpfe+++++++++e++++e+L
  Cc01_g13060 470 NKMIVHKASDAKTLHIVDFGILYGFQWPILIQHLSTRPGGPPKLRITGIERPQPGfrPSERVEETGRRLARYCERFHVPFEYQAIAEQNWEAIKVEDL 567
                  ************************************************************************************9999********** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++ +gE+laVn  +q  +l+de+v+++s+rd+vL+l+++++P+++v +  + +++++ F++rf eal +ys+lfd ++a+lpre+ +r+++E++++gr
  Cc01_g13060 568 NIAEGEVLAVNALFQFNNLFDETVKVDSPRDAVLRLIRKMNPDIFVNAVTNGSYSAPFFVTRFREALFHYSSLFDIFDATLPREDLQRMNLEQQFFGR 665
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  e+ n++acegaer+ r et+++W+ r ++aGFkp+pl+++  ++ +  ++  + + +  +e+  ++++gWk+r L+s S+W
  Cc01_g13060 666 EAINIIACEGAERVVRPETYKQWQVRHTRAGFKPLPLNQELLEKLRGKVKGGYHKDFVFDEDGSWMLQGWKGRILYSSSCW 746
                  ***************************************************99888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.547349727IPR005202Transcription factor GRAS
PfamPF035143.0E-113375746IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MDPRFNQLPD SVNGFKFEDE IVLPSFEESP NLLNGFKFGD NALDLNFVDT SSFSPTPGTG  60
NLPAFSTGSS EVDSPDDGDS DPVLRYLNQI LLEENMEEKP SMFPDPLALR AAEKSLYDAL  120
GQKYPPSPYQ VDQNAESPDS LFGSASEHSA NSSSSASSSV EPGEYKSAAG QSYSLDYSFP  180
LSSENSSNLL FNSVSSFGNH MNGQLNSLAY NNPIPNIFSD SESISQFKKG MEEASKFLPS  240
GNQLIIDLDK YALPPKSEEI FLESKVKEEK DDGDHSPNGS RGRKHLHRQE SDIEQQRSSK  300
QSAVYDEEAV YDEEAELSEM FDRVLLCTDI KWCHVAAQLH DEANKTGQQN GLPDGTGGGK  360
TRSRNQGSKS EAVDLRTLLI SCAQSVANDD QRTAREQLKQ IRQHSSPSGD ACQRLASIFA  420
NGLEARLAGT GTEIYAALAS KRISAAEKLK AYQVYLSACP FKKISIFFAN KMIVHKASDA  480
KTLHIVDFGI LYGFQWPILI QHLSTRPGGP PKLRITGIER PQPGFRPSER VEETGRRLAR  540
YCERFHVPFE YQAIAEQNWE AIKVEDLNIA EGEVLAVNAL FQFNNLFDET VKVDSPRDAV  600
LRLIRKMNPD IFVNAVTNGS YSAPFFVTRF REALFHYSSL FDIFDATLPR EDLQRMNLEQ  660
QFFGREAINI IACEGAERVV RPETYKQWQV RHTRAGFKPL PLNQELLEKL RGKVKGGYHK  720
DFVFDEDGSW MLQGWKGRIL YSSSCWSPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-493587481379Protein SCARECROW
5b3h_D7e-493587481379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027158482.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A068ULG00.0A0A068ULG0_COFCA; Uncharacterized protein
STRINGXP_009606498.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]