PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g12730

Common Name

GSCOC_T00028217001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 307aa MW: 32462.2 Da PI: 8.8779

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g12730	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.8	2.8e-39	67	126	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+ lkcprC+stntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nkk++ Cc01_g12730 67 EAGLKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKTK 126 6779*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-35	50	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-32	69	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.534	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MVFSSFPVYL DHPNLHQFQQ PEHQGSGVEN SQLPPPPPPF PVGGGGTSIR PGSMVDRARL 60 AKLPLPEAGL KCPRCESTNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL RNVPVGGGCR 120 RNKKTKSSSS KSSSTAERQM PGSNSTSTPS PSSCSADMAG QFPQQANQLP LMAALTGLNH 180 YGGGHIGPGI GGFQAQMMPP TGNGLANMGF NLGGNGNDLS AAGGGADHWR LPSIGGFEAT 240 TSLFPFQSEG VEASSNSMLG DHQQLENPGL NLTKQFLVNS ENNQYWGGSP WTGFSGLNSS 300 STSHLL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027087140.1	1e-174	dof zinc finger protein DOF3.6-like
Refseq	XP_027164775.1	1e-174	dof zinc finger protein DOF3.6-like
TrEMBL	A0A068UKP4	0.0	A0A068UKP4_COFCA; Uncharacterized protein
STRING	XP_009774236.1	1e-111	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	2e-52	OBF-binding protein 3