PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g12280 | ||||||||
Common Name | GSCOC_T00028159001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 218aa MW: 24902.3 Da PI: 10.037 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.1 | 6.5e-16 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +lv +v+ +G ++W+ I++ g++Rt+k+c++rw +yl Cc01_g12280 8 KGPWTEQEDVQLVLCVNVYGDRRWDFISKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.3e-17 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++ Cc01_g12280 61 RGKMTPHEERLVLELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.426 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.23E-29 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-14 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-19 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.28E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 26.464 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-10 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MVQEEIRKGP WTEQEDVQLV LCVNVYGDRR WDFISKVSGL KRTGKSCRLR WVNYLHPGLK 60 RGKMTPHEER LVLELHSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QERKKAAISP 120 SSSSSSSSPS FSNCSSSISN GNSPSMESGP ITETKERSFY DTGGLEMLTA KGNKTGQAEE 180 ERLQKVYSMD EIWKDIEFSD IKQWLLLCGI IALSRCG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-28 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108891.1 | 1e-146 | transcription factor MYB59-like | ||||
Swissprot | Q9LX82 | 5e-74 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A068UKJ2 | 1e-159 | A0A068UKJ2_COFCA; Uncharacterized protein | ||||
STRING | VIT_06s0004g04140.t01 | 1e-89 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 2e-73 | myb domain protein 48 |
Publications ? help Back to Top | |||
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