PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g11960 | ||||||||
Common Name | GSCOC_T00028115001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | WOX | ||||||||
Protein Properties | Length: 216aa MW: 24872.3 Da PI: 9.9316 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.9 | 2e-19 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+e l +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a+e++ Cc01_g11960 6 STRWCPTPEHLMILEEMYRGgIRTPNASQIQKITAHLsfygKIEGKNVFYWFQNHKARERQ 66 68*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 116.9 | 9.6e-38 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+Ptpe ++iLee+y+ G+rtPn+++iq+ita+L+ yGkie+kNVfyWFQN+kaRerqk Cc01_g11960 5 NSTRWCPTPEHLMILEEMYRGGIRTPNASQIQKITAHLSFYGKIEGKNVFYWFQNHKARERQK 67 689***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 9.734 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.1E-4 | 4 | 71 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00227 | 7 | 67 | No hit | No description |
Pfam | PF00046 | 5.5E-17 | 7 | 66 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.81E-10 | 7 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-6 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MSPSNSTRWC PTPEHLMILE EMYRGGIRTP NASQIQKITA HLSFYGKIEG KNVFYWFQNH 60 KARERQKLRR KLSKQLYQQQ LLQEQLCLHR RHNQENKFLS SNESPPPALH QLSLGKSADY 120 LHPGGVGSAA AHMTSCTWKR DPPNMYELQN TSMMRSYGDD WTMMMLKMRD AGPTHYPSCC 180 RSNRPLKTLE LFPITTQNVK DHQATTSNPS LNSYS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027107632.1 | 1e-144 | WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A068UL40 | 1e-161 | A0A068UL40_COFCA; Uncharacterized protein | ||||
STRING | XP_010259966.1 | 3e-60 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 7e-36 | WOX family protein |