PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g11310
Common NameGSCOC_T00024258001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 460aa    MW: 50010.8 Da    PI: 9.4654
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g11310genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Cc01_g11310  6 FICEICNKGFQRDQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H2120.0006482104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H + +
  Cc01_g11310  82 WKCEKCSKKYAVQSDWKAHSKIC 104
                  58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.13E-7528No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PfamPF121715.4E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551004777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.13E-777102No hitNo description
SMARTSM0035514082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTNK EVKKKVYICP EKTCVHHDPS  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH SKICGTREYK CDCGTLFSRK  120
DSFITHRAFC DALAEESARF APIPSANLNF RNELFNGGLS SLQPAGNPQF SNSIAGLDPA  180
TGQLNLNGQK PRLPLWLDNA NTQLNNPIGN HPGNSNAFLA SSSTSLPELV QMTPTNMLGL  240
SSQNQWFNIG GNASSSGLPR VLKEEEENRG NLSDHISSLY YNNGQNSSQH ETAPAHMSAT  300
ALLQKAAQMG STRSNSAIFG TGFGLMSSSL SSLSNFNSLN QSRNELQNFG QAENLNGLMT  360
STSQSTMTTN QGDGLLLGNM SSSNNLVGNL RHPSAPPTIM PGSTDRGGSQ SKSSGNEAEG  420
GLTRDFLGVG GNESRPFLQQ NELVKFASSM SSAMDFGNQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3778147372Zinc finger protein JACKDAW
5b3h_F5e-3778147372Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108012.10.0zinc finger protein BALDIBIS-like isoform X1
RefseqXP_027108021.10.0zinc finger protein BALDIBIS-like isoform X1
RefseqXP_027108029.10.0zinc finger protein BALDIBIS-like isoform X1
SwissprotQ944L31e-104IDD9_ARATH; Zinc finger protein BALDIBIS
TrEMBLA0A068UF650.0A0A068UF65_COFCA; Uncharacterized protein
STRINGVIT_06s0004g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.13e-93C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]