PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g11020
Common NameGSCOC_T00024219001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARF
Protein Properties Length: 699aa    MW: 76455.8 Da    PI: 7.5605
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g11020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.84.8e-24104205199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   + +++ 
  Cc01_g11020 104 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLIAGDSIVFL--RAESGD 197
                  89****************************997556555..8************************************************..448999 PP

                  .EEEEE-S CS
           B3  92 lvvkvfrk 99 
                  l+v+++r+
  Cc01_g11020 198 LCVGIRRA 205
                  9****997 PP
2Auxin_resp110.12.3e-36274356283
   Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ a ++++F+vvY+Prast+eF vk+++v++a++v++++GmRfkm fetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+
  Cc01_g11020 274 ASFAVKGQPFDVVYYPRASTPEFFVKASSVSSAMRVQWCAGMRFKMPFETEDSSRISWfMGTIAAVQFADPIRWPNSPWRLLQ 356
                  6677899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-3799213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.03E-29100205IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-21103204No hitNo description
PROSITE profilePS5086313.098104206IPR003340B3 DNA binding domain
SMARTSM010193.1E-22104206IPR003340B3 DNA binding domain
PfamPF023624.5E-22104205IPR003340B3 DNA binding domain
PfamPF065076.2E-31273356IPR010525Auxin response factor
PROSITE profilePS5174519.425587665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MKEMVEKSLD SQLWHACAGG MVQMPVVNSR VYYFPQGHAE HTLANVDFAG MPRVPPLILC  60
RVAAVKFLAD PETDEVYARI RLVPIGNNEG CYEFDDDADK PASFAKTLTQ SDANNGGGFS  120
VPRYCAETIF PRLDYTADPP VQTVVAKDVH GETWKFRHIY RGTPRRHLLT TGWSTFVNQK  180
KLIAGDSIVF LRAESGDLCV GIRRAKRGGI GGPESPSGWN SAAGNYGGFS MFLREDENKL  240
MRTGSAGNLN SPGNGGGALK GRGRVRAESV IEAASFAVKG QPFDVVYYPR ASTPEFFVKA  300
SSVSSAMRVQ WCAGMRFKMP FETEDSSRIS WFMGTIAAVQ FADPIRWPNS PWRLLQVTWD  360
EPDLLQNVKR VSPWLVELVS NMPVIHLSPF SPARKKLRLL QHSDFSLDGQ FPMPSFSGNP  420
LGPSSPLCCL SDNIPAGIQG ARHAQLGVQL ADLHLSNKMH LGLISPSFQQ LDPLAKSSDG  480
ITRGHLDSSD DISCLLTMGN SSQKLEKTTS VKTPRFLLFG QPILTEQQMS HGYNSDAVSQ  540
VGKSSACGIS LKAEDVSLDQ KVHLGSLPNT GLFWNQGCHA AELGLDTGHC KVFLESEDVG  600
RTLDLSVLGS YEELYKKLTS MFMIERSELE GHVFYRDATG ALKQTGDESF SEFVRTAKRL  660
TIFKNPGNSV GRKWLTGLPT AERGLDSSNQ AGPLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-74437714353Auxin response factor 1
4ldy_B3e-74437714353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027085933.10.0auxin response factor 18-like
RefseqXP_027085940.10.0auxin response factor 18-like
RefseqXP_027085948.10.0auxin response factor 18-like
RefseqXP_027085957.10.0auxin response factor 18-like
RefseqXP_027085965.10.0auxin response factor 18-like
RefseqXP_027085973.10.0auxin response factor 18-like
RefseqXP_027085983.10.0auxin response factor 18-like
RefseqXP_027085989.10.0auxin response factor 18-like
RefseqXP_027085998.10.0auxin response factor 18-like
RefseqXP_027182473.10.0auxin response factor 18
RefseqXP_027182479.10.0auxin response factor 18
RefseqXP_027182486.10.0auxin response factor 18
RefseqXP_027182494.10.0auxin response factor 18
RefseqXP_027182500.10.0auxin response factor 18
RefseqXP_027182508.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A068UFQ30.0A0A068UFQ3_COFCA; Auxin response factor
STRINGXP_009602946.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]