PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g10830
Common NameGSCOC_T00024196001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 857aa    MW: 93889.5 Da    PI: 7.3787
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g10830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.2e-096676992254
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  ++yp+ +++  LA+++gL+ +qV++WF N R +
  Cc01_g10830 667 HPYPTDADKHMLATQTGLSRNQVSNWFINARVR 699
                  89*****************************87 PP
2BELL1024.5e-33521586772
         BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  +kkakLl +leeV++rYk+y++q+q+v+ssFe vagl +a+p++s Alk+++rhFrc+++ai++q+
  Cc01_g10830 521 QKKAKLLYMLEEVCRRYKHYHQQMQMVVSSFESVAGLTAATPFISQALKTVARHFRCIRNAISDQL 586
                  79*************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-44423584IPR006563POX domain
PfamPF075262.8E-39428583IPR006563POX domain
PROSITE profilePS5007111.742640703IPR001356Homeobox domain
CDDcd000861.24E-11643704No hitNo description
SMARTSM003894.5E-9643707IPR001356Homeobox domain
SuperFamilySSF466898.55E-17645709IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27646707IPR009057Homeodomain-like
PfamPF059202.5E-18660699IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
METGNFRPEL HVAQQSRRDK LRVQHHPNPC NQNVEVYANQ LVPFSTHEGL NPDLIQLRSI  60
RYGNLSYEPL VFSSEMLDFS TNSQALLAHS NKDVTMLHQE SKRIAGDVED PSTNLSNTLP  120
SNVNSSAKVS GDPQNCSTWK SIGSQESCDW ITNYTSGSAG GIDSNHNPIF VGGGLSGSLK  180
ANNNNPSTST IYFNKPSSSY GNHHEVRSSL TSPPGEISSR NSPKNHVGHG HFNSPSVYHT  240
ANTFQEVSSA TIMTQELGVA AIAQQHSKEI AHVSWPNGGN ELVLLPAYAD HSNPLGLKHG  300
SGECRRWNGE LEYCASTKNA AERDHRSIAN DSPNTQALSL SLSSVPLSKS YACQTGERIM  360
SEDLHSGAGC FSNIQEIKAL KSDYHCFDSK PSYHGKVLES AQHDMVGNPT FAHRAAGPLG  420
PFTGYATILK SSKFLKPAQQ LLDDFCNVFG PKCTKMPEPP ERISAEIRAC DDAVNANESI  480
IGALAGDSGG SSSTFYSSNE KTQDHGGLSS PTESYRPDYL QKKAKLLYML EEVCRRYKHY  540
HQQMQMVVSS FESVAGLTAA TPFISQALKT VARHFRCIRN AISDQLKNVR KALGEDLASP  600
TTGTSSSKGD ICTSRLKLMD QTFQKQKVVG GNVGFFEPQQ HVWRPQRGLP ERAVAILRAW  660
LFDHFLHPYP TDADKHMLAT QTGLSRNQVS NWFINARVRV WKPMVEEIHT LETKGIAETG  720
ASVGKTDGKA MTESVSRSND SQPLNRLNAG RSSEKQVECS DVGSSVYMGS RMNDDTWNQK  780
RSRVECHVPG SMDGSLVGFV PYQQSGIEIG GLGAVSLTLG LRQNADGVQP QHPLQQQHEN  840
QLRRHFGDQI IYDFVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A9e-16649707563Homeobox protein Meis2
4xrm_B9e-16649707563Homeobox protein Meis2
4xrs_A7e-16649706158Homeobox protein Meis1
4xrs_B7e-16649706158Homeobox protein Meis1
5bng_A9e-16649707159Homeobox protein Meis2
5bng_B9e-16649707159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101166.10.0uncharacterized protein LOC113720656
RefseqXP_027101167.10.0uncharacterized protein LOC113720656
RefseqXP_027101168.10.0uncharacterized protein LOC113720656
TrEMBLA0A068UHG50.0A0A068UHG5_COFCA; Uncharacterized protein
STRINGVIT_06s0004g02580.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87202227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.13e-91BEL1-like homeodomain 8