PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g10490
Common NameGSCOC_T00024145001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 364aa    MW: 40676.2 Da    PI: 7.5144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g10490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
      Cc01_g10490 14 KGPWSPEEDAKLKEFIEKFGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding36.79.6e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  + +  G++ W+ Ia+ ++ gRt++++k++w++
      Cc01_g10490  69 GEFSDDEDRIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.342962IPR017930Myb domain
SuperFamilySSF466895.72E-2711109IPR009057Homeodomain-like
SMARTSM007171.8E-121364IPR001005SANT/Myb domain
PfamPF002495.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-241569IPR009057Homeodomain-like
CDDcd001671.39E-91662No hitNo description
PROSITE profilePS5129421.94863117IPR017930Myb domain
SMARTSM007171.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.7E-1069111IPR001005SANT/Myb domain
CDDcd001674.32E-870113No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEFIE KFGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
IPLDPRKLPP FSNSLHTTSS PQSQAFSSLS QLYNDCSPYY STSAKSCLTG FESFPSVQPN  180
LLFNGNNNNV NPMATITTAN HHSYLQGHNQ EGLISPMQFY PGKDNMLIFG GTDQASCSSS  240
DGSCSQISYG KEIKQEHMNG GSLQGYNLSN STNGYDHHHH QENQKFMVDY GNQISSTTWG  300
DGRGNDHDQK PSVVLCGNGT STTQLQYDLE EVKQLISSSN MSLFFNDENK THESREAMYY  360
YNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106285.10.0transcription factor RAX2-like
TrEMBLA0A068UFS80.0A0A068UFS8_COFCA; Uncharacterized protein
STRINGPOPTR_0009s01270.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.15e-78myb domain protein 36