PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g10260

Common Name

GSCOC_T00024109001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 336aa MW: 36490.2 Da PI: 6.3422

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g10260	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	141	163	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H Cc01_g10260 141 YQCKTCNRTFPSFQALGGHRASH 163 9***********99999998887 PP
2	zf-C2H2	11.8	0.00077	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Cc01_g10260 239 HECSICGAEFASGQALGGHMRRH 261 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.2E-12	140	165	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.13E-8	140	163	No hit	No description
SMART	SM00355	0.026	141	163	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.346	141	168	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	143	163	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.13E-8	234	261	No hit	No description
SMART	SM00355	0.016	239	261	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	6.6E-12	239	262	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.118	239	266	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	241	261	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDALEEFSGS NDHSIVIKGK RTKRRQRPLS PVGRAAVVTS SSSSGGGGDD QGGGKDGEVL 60 GYIYSLIPSC NTSTSDISIS ATSTDQEDED MANCLILLAQ GESCRKQVDQ DRESKMEKFT 120 SRRFNEMATT TTGGKVGFFV YQCKTCNRTF PSFQALGGHR ASHKKPKINI EDNKATIVTP 180 SNDHHHHQEE EEEEEEEKES AGEEQAAGQL IGRQSPPLSI QSTNKPCSTA ASNKASKSHE 240 CSICGAEFAS GQALGGHMRR HRNSMTASTS KVATILETSP SIDHHDQKPR NIFPLDLNLP 300 APSEDDVHRD LKFQFSANQQ PHLVFSAPAL VDCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027182333.1	0.0	zinc finger protein ZAT5
TrEMBL	A0A068UEU9	0.0	A0A068UEU9_COFCA; Uncharacterized protein
STRING	XP_009613500.1	2e-81	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1262	24	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-53	C2H2 family protein