PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g09290

Common Name

GSCOC_T00023979001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 502aa MW: 55611.6 Da PI: 7.0026

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g09290	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	197	233	4	40
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 k rr+++NReAAr+sR+RKka++++Le+ L++ Cc01_g09290 197 AKTLRRLAQNREAARKSRLRKKAYVQQLETSRIRLTQ 233 6889*************************86655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-7	192	271	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	196	240	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.4E-8	196	240	No hit	No description
Pfam	PF00170	1.0E-7	197	238	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.53E-6	198	240	No hit	No description
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-32	279	354	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MASQRVGEAG FSNSGPSHHH HHNTMPYAVF RGLNPPSTSF INQEGSAFDF GELEEAIVLQ 60 GVKINNDEAK TPLYAATVRP AATLEMFPSW PTRLIQTPRG SSKSGEESTD SGSAVNTLSS 120 RAEARLEPES PISKKSSLEP QGLEQKHLQL PNEQQQLEMA NDGSRVEMPQ DHQPAGGKPT 180 TEKRRGPGST SEKVLDAKTL RRLAQNREAA RKSRLRKKAY VQQLETSRIR LTQLEQDLQR 240 ARAQGFFLGG GGAPGGNISS GAAIFDMEYA RWLDDDHRHM SELRTALQAH LSDGDMRVIV 300 DGYIAHYDEI FRLKGVAAKS DVFHLITGMW TTPAERCFLW MGGFRPSELI KMLITQLDPL 360 TEQQVVGIYG LQHSSQQAEE ALSQGLEQLQ QSLIETIAGG TVNDGMHHMA VALGKLTNLE 420 GFVRQADNLR QQTLHHLLRI LTVRQVARCF LVIGEYYGRL RALSSLWASR PRETMIGDEN 480 SCQTTTDLQM VQSSQNQFAN F*

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MASQRVGEAG FSNSGPSHHH HHNTMPYAVF RGLNPPSTSF INQEGSAFDF GELEEAIVLQ  60
GVKINNDEAK TPLYAATVRP AATLEMFPSW PTRLIQTPRG SSKSGEESTD SGSAVNTLSS  120
RAEARLEPES PISKKSSLEP QGLEQKHLQL PNEQQQLEMA NDGSRVEMPQ DHQPAGGKPT  180
TEKRRGPGST SEKVLDAKTL RRLAQNREAA RKSRLRKKAY VQQLETSRIR LTQLEQDLQR  240
ARAQGFFLGG GGAPGGNISS GAAIFDMEYA RWLDDDHRHM SELRTALQAH LSDGDMRVIV  300
DGYIAHYDEI FRLKGVAAKS DVFHLITGMW TTPAERCFLW MGGFRPSELI KMLITQLDPL  360
TEQQVVGIYG LQHSSQQAEE ALSQGLEQLQ QSLIETIAGG TVNDGMHHMA VALGKLTNLE  420
GFVRQADNLR QQTLHHLLRI LTVRQVARCF LVIGEYYGRL RALSSLWASR PRETMIGDEN  480
SCQTTTDLQM VQSSQNQFAN F*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027083660.1	0.0	transcription factor TGA9-like isoform X1
Refseq	XP_027185250.1	0.0	transcription factor TGA9
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A068UFE7	0.0	A0A068UFE7_COFCA; Uncharacterized protein
STRING	EOY33449	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]