PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g06650

Common Name

GSCOC_T00030062001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 545aa MW: 61741.7 Da PI: 6.563

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g06650	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	77.9	1.9e-24	272	348	76	152
GRAS 76 eelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspes 152 + l+a++++ ++P+ ++s++ a + I + ++g++++HiiDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++ Cc01_g06650 272 DILKAYQAYILACPFKRMSNIFADKSIGRLTKGARCLHIIDFGIAYGFQWPCLIQGLSLRPGGPPKLRITGIDLPQP 348 57899*******************************************************************99875 PP
2	GRAS	176.5	2e-54	349	540	183	374
GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 akr+e+++le+L++ +gE+++Vn+ ++l +++de+++ + +rd+vL+l+k+++P+ +v+ + +n + F++rf eal+++s+lfd+le+++p+ ++ Cc01_g06650 349 AKRWETIQLEDLKIGKGETIVVNCLYRLRHIPDETAEGSTARDDVLNLIKKINPDFFVHGVTNGTYNVPFFVTRFREALHHFSSLFDMLEKTVPQSDQ 446 589********************************************************************************************* PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +r+ E+e+lgr+ +nv+aceg++r+er et+++W+ r ++aGF+++pl+++++ ++++ ++ + + + v+e+ +++++gWk+r +++S+W+ Cc01_g06650 447 DRMLFEKEVLGRDSMNVIACEGSQRIERPETYKQWHVRNQRAGFSQLPLNQDIVREVRAKVKLQYHKDFLVDEDGHWILQGWKGRVFYALSCWK 540 *************************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.344	179	520	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.5E-22	272	348	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.8E-52	349	540	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MQRNCLMEFK YNCQSISASL EKNLAFECGI GSTCNFDVAG HSPSVGSSFP VNAAAQPEGD 60 SSLPVDHFDG VFKYLNQMLM EEDLEQRPCM YQDLLALQAA EKSFHDALTG ADFNVVANKE 120 EKKRDDFDNG SRRRRNHDRE DSEHGEGRSS KLFASHNEAG MPENEAAEEM YDKALLCPKR 180 NPGFYDDSST CDSDDPTPES KGWNYQKVGI KPESKRGRPR AGEKKINIRE LVDLSSLLTQ 240 SAQAVAEYDN KTAQELLNRI REHSSPCVSA GDILKAYQAY ILACPFKRMS NIFADKSIGR 300 LTKGARCLHI IDFGIAYGFQ WPCLIQGLSL RPGGPPKLRI TGIDLPQPAK RWETIQLEDL 360 KIGKGETIVV NCLYRLRHIP DETAEGSTAR DDVLNLIKKI NPDFFVHGVT NGTYNVPFFV 420 TRFREALHHF SSLFDMLEKT VPQSDQDRML FEKEVLGRDS MNVIACEGSQ RIERPETYKQ 480 WHVRNQRAGF SQLPLNQDIV REVRAKVKLQ YHKDFLVDED GHWILQGWKG RVFYALSCWK 540 PIQD*

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MQRNCLMEFK YNCQSISASL EKNLAFECGI GSTCNFDVAG HSPSVGSSFP VNAAAQPEGD  60
SSLPVDHFDG VFKYLNQMLM EEDLEQRPCM YQDLLALQAA EKSFHDALTG ADFNVVANKE  120
EKKRDDFDNG SRRRRNHDRE DSEHGEGRSS KLFASHNEAG MPENEAAEEM YDKALLCPKR  180
NPGFYDDSST CDSDDPTPES KGWNYQKVGI KPESKRGRPR AGEKKINIRE LVDLSSLLTQ  240
SAQAVAEYDN KTAQELLNRI REHSSPCVSA GDILKAYQAY ILACPFKRMS NIFADKSIGR  300
LTKGARCLHI IDFGIAYGFQ WPCLIQGLSL RPGGPPKLRI TGIDLPQPAK RWETIQLEDL  360
KIGKGETIVV NCLYRLRHIP DETAEGSTAR DDVLNLIKKI NPDFFVHGVT NGTYNVPFFV  420
TRFREALHHF SSLFDMLEKT VPQSDQDRML FEKEVLGRDS MNVIACEGSQ RIERPETYKQ  480
WHVRNQRAGF SQLPLNQDIV REVRAKVKLQ YHKDFLVDED GHWILQGWKG RVFYALSCWK  540
PIQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-24	228	541	42	380	Protein SCARECROW
5b3h_A	5e-24	228	541	41	379	Protein SCARECROW
5b3h_D	5e-24	228	541	41	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103396.1	0.0	scarecrow-like protein 14
TrEMBL	A0A068UN42	0.0	A0A068UN42_COFCA; Uncharacterized protein
STRING	Migut.D02077.1.p	1e-180	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46600.1	1e-130	GRAS family protein