PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g06640

Common Name

GSCOC_T00030060001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 681aa MW: 76979.4 Da PI: 5.0409

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g06640	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	375.9	5.2e-115	305	676	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+a + d+ a++lL+++++++sp+gdp++Rla++f++AL+ar+a+++ ly+al++++t+ +++l a++++ e++P+ ++s+ a Cc01_g06640 305 LRDLLTRCAQAAAGYDNWIANELLKQIRQHSSPYGDPTERLAHCFANALEARIAGTGAALYSALTAKRTP---AADVLRAYQAYMEICPFQRMSNAFA 399 6899***********************************************************99999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N+ I + +++ +r+HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g +e++eetg+rL+++A+++ vpfefn+ +akr++++++e+L Cc01_g06640 400 NKSIGRLTSKVTRIHIIDFGILYGFQWPCFIQGISLRPGGPPKLRITGIDLPQPGfrPAERIEETGRRLENYAKRFSVPFEFNA-IAKRWDTITTEDL 496 **************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 v+++E l+Vn+ ++l +++de+v +s+rd+v++l+++++P+++v+ + ++++ Fl+rf eal+++s+lfd++ea+lpre+ +r++ Ere++gr Cc01_g06640 497 VVDKDEILVVNCLYRLRNVPDETVVPSSPRDAVMNLIRKINPDIFVHGILNGMYSAPFFLTRFKEALYHFSSLFDMFEATLPREDLNRSMFEREVIGR 594 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+aceg+er+er et+++W+ r ++aGF+++pl++++ ++++ ++ ++ + v+e+s+++++gWk+r ++++ +W+ Cc01_g06640 595 EVMNVIACEGTERVERPETYKQWQVRNQRAGFRQLPLNKEIIREVRAKVKSSYNGHFLVDEDSDWMLQGWKGRVIYALACWK 676 *************************************************777***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	67.025	279	656	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-112	305	676	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MDTLFRADGY SNFGSEFLQP DFDSQDSLSE GNLVNDCQFD HLLNNVSGPS TFSSLPDDIS 60 ATQCELEDCT VERDYFDGVF KYLQQMLMDE EDLVDKHCML QDCLAFQSAE KSFYEVLNEN 120 HPSSLGSSPS ALDNSAEIWP NEVNDPVVSH HTFQSNFQLT TPAESSDLSV HYLVDPCLSP 180 SQTLQSSTER NGTVVAAGEK SSNDRSKKKN TRRDPEGGDQ DKDERPSKQL ASHTDEIDNI 240 EDYDDALLCP ARNPNFYGES PARGGTECPE IEGRKKQQYV PPTTAKRGRP RASQKQDSIR 300 EVVDLRDLLT RCAQAAAGYD NWIANELLKQ IRQHSSPYGD PTERLAHCFA NALEARIAGT 360 GAALYSALTA KRTPAADVLR AYQAYMEICP FQRMSNAFAN KSIGRLTSKV TRIHIIDFGI 420 LYGFQWPCFI QGISLRPGGP PKLRITGIDL PQPGFRPAER IEETGRRLEN YAKRFSVPFE 480 FNAIAKRWDT ITTEDLVVDK DEILVVNCLY RLRNVPDETV VPSSPRDAVM NLIRKINPDI 540 FVHGILNGMY SAPFFLTRFK EALYHFSSLF DMFEATLPRE DLNRSMFERE VIGREVMNVI 600 ACEGTERVER PETYKQWQVR NQRAGFRQLP LNKEIIREVR AKVKSSYNGH FLVDEDSDWM 660 LQGWKGRVIY ALACWKPAGL *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MDTLFRADGY SNFGSEFLQP DFDSQDSLSE GNLVNDCQFD HLLNNVSGPS TFSSLPDDIS  60
ATQCELEDCT VERDYFDGVF KYLQQMLMDE EDLVDKHCML QDCLAFQSAE KSFYEVLNEN  120
HPSSLGSSPS ALDNSAEIWP NEVNDPVVSH HTFQSNFQLT TPAESSDLSV HYLVDPCLSP  180
SQTLQSSTER NGTVVAAGEK SSNDRSKKKN TRRDPEGGDQ DKDERPSKQL ASHTDEIDNI  240
EDYDDALLCP ARNPNFYGES PARGGTECPE IEGRKKQQYV PPTTAKRGRP RASQKQDSIR  300
EVVDLRDLLT RCAQAAAGYD NWIANELLKQ IRQHSSPYGD PTERLAHCFA NALEARIAGT  360
GAALYSALTA KRTPAADVLR AYQAYMEICP FQRMSNAFAN KSIGRLTSKV TRIHIIDFGI  420
LYGFQWPCFI QGISLRPGGP PKLRITGIDL PQPGFRPAER IEETGRRLEN YAKRFSVPFE  480
FNAIAKRWDT ITTEDLVVDK DEILVVNCLY RLRNVPDETV VPSSPRDAVM NLIRKINPDI  540
FVHGILNGMY SAPFFLTRFK EALYHFSSLF DMFEATLPRE DLNRSMFERE VIGREVMNVI  600
ACEGTERVER PETYKQWQVR NQRAGFRQLP LNKEIIREVR AKVKSSYNGH FLVDEDSDWM  660
LQGWKGRVIY ALACWKPAGL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	9e-50	294	677	10	380	Protein SCARECROW
5b3h_A	1e-49	294	677	9	379	Protein SCARECROW
5b3h_D	1e-49	294	677	9	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103389.1	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-173	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068UPY0	0.0	A0A068UPY0_COFCA; Uncharacterized protein
STRING	Migut.D02077.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-177	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]