PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g05900
Common NameGSCOC_T00027418001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 471aa    MW: 52877.8 Da    PI: 6.2033
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g05900genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS471.45e-144464671374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v++g+le+a+ +L ++s+la+pdgd+mqR+a+yfteALa r+++++++lykal++++ s   +see+ ++k+f+e +P+lk++++++
  Cc01_g05900  46 LIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRIS--VVSEEVLVRKMFFEFFPFLKVAFVIT 141
                  689*************************************************************999887..699*********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI ea+ege++vHiiD+++s+++QW aLlq L++Rpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+fn+ ++++le+l++e+Lrv
  Cc01_g05900 142 NQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQ----QKEILDQMAHILSEDAEKLDIPFQFNP-IVSKLENLDVEKLRV 234
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll........................................................desvsles..erdevLklvkslsP 236
                  k+gEala+++vlqlh ll                                                            s++   + d++L+++++lsP
  Cc01_g05900 235 KTGEALAISSVLQLHALLatdeemrkkspmvpkssnghhlqrvlqmnqgtlgellekdlvngyspssdsassspL---SSNAsaKLDSFLNALWGLSP 329
                  *********************************************************************885541...3222446899********** PP

         GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                  k++vv+eq+++hn+++++er++e+l++y+alfd+le++lpr+s er kvE++l+g+ei+n++aceg er+erhe+lekW +r++ aGF++v+ls++a+
  Cc01_g05900 330 KIMVVAEQDSNHNGANLMERLSESLYFYAALFDCLESTLPRTSVERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAM 427
                  ************************************************************************************************** PP

         GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   qak+ll++ + dgy+++ee+g++v++W+dr+L+svSaWr
  Cc01_g05900 428 LQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWR 467
                  ***************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.93820447IPR005202Transcription factor GRAS
PfamPF035141.7E-14146467IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MFQDDGSSSV TSSPLQMFPM MSLSPGLGSP YQWLKELKSE ERGLYLIHLL LTCANHVATG  60
SLENANMALD QISHLATPDG DTMQRIASYF TEALADRVLK TWPGLYKALH STRISVVSEE  120
VLVRKMFFEF FPFLKVAFVI TNQAIIEAME GEKMVHIIDL NASEPAQWRA LLQDLSARPE  180
GPPHLRITGV HQQKEILDQM AHILSEDAEK LDIPFQFNPI VSKLENLDVE KLRVKTGEAL  240
AISSVLQLHA LLATDEEMRK KSPMVPKSSN GHHLQRVLQM NQGTLGELLE KDLVNGYSPS  300
SDSASSSPLS SNASAKLDSF LNALWGLSPK IMVVAEQDSN HNGANLMERL SESLYFYAAL  360
FDCLESTLPR TSVERLKVEK MLFGEEIKNI IACEGVERKE RHEKLEKWIQ RFDLAGFGNV  420
ALSYYAMLQA KRLLQNRSCD GYKIKEENGC IVICWQDRAL FSVSAWRCRR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-60294691380Protein SCARECROW
5b3h_D2e-60294691380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027079709.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A068UJK60.0A0A068UJK6_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000118390.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29142453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]