PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g05900 | ||||||||
Common Name | GSCOC_T00027418001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 471aa MW: 52877.8 Da PI: 6.2033 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 471.4 | 5e-144 | 46 | 467 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lLl+cA++v++g+le+a+ +L ++s+la+pdgd+mqR+a+yfteALa r+++++++lykal++++ s +see+ ++k+f+e +P+lk++++++ Cc01_g05900 46 LIHLLLTCANHVATGSLENANMALDQISHLATPDGDTMQRIASYFTEALADRVLKTWPGLYKALHSTRIS--VVSEEVLVRKMFFEFFPFLKVAFVIT 141 689*************************************************************999887..699*********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 NqaI ea+ege++vHiiD+++s+++QW aLlq L++Rpegpp+lRiTgv++ +ke l ++++ L++ Ae+l++pf+fn+ ++++le+l++e+Lrv Cc01_g05900 142 NQAIIEAMEGEKMVHIIDLNASEPAQWRALLQDLSARPEGPPHLRITGVHQ----QKEILDQMAHILSEDAEKLDIPFQFNP-IVSKLENLDVEKLRV 234 ***************************************************....9**************************.7999*********** PP GRAS 197 kpgEalaVnlvlqlhrll........................................................desvsles..erdevLklvkslsP 236 k+gEala+++vlqlh ll s++ + d++L+++++lsP Cc01_g05900 235 KTGEALAISSVLQLHALLatdeemrkkspmvpkssnghhlqrvlqmnqgtlgellekdlvngyspssdsassspL---SSNAsaKLDSFLNALWGLSP 329 *********************************************************************885541...3222446899********** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334 k++vv+eq+++hn+++++er++e+l++y+alfd+le++lpr+s er kvE++l+g+ei+n++aceg er+erhe+lekW +r++ aGF++v+ls++a+ Cc01_g05900 330 KIMVVAEQDSNHNGANLMERLSESLYFYAALFDCLESTLPRTSVERLKVEKMLFGEEIKNIIACEGVERKERHEKLEKWIQRFDLAGFGNVALSYYAM 427 ************************************************************************************************** PP GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 qak+ll++ + dgy+++ee+g++v++W+dr+L+svSaWr Cc01_g05900 428 LQAKRLLQNRSCDGYKIKEENGCIVICWQDRALFSVSAWR 467 ***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 57.938 | 20 | 447 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-141 | 46 | 467 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MFQDDGSSSV TSSPLQMFPM MSLSPGLGSP YQWLKELKSE ERGLYLIHLL LTCANHVATG 60 SLENANMALD QISHLATPDG DTMQRIASYF TEALADRVLK TWPGLYKALH STRISVVSEE 120 VLVRKMFFEF FPFLKVAFVI TNQAIIEAME GEKMVHIIDL NASEPAQWRA LLQDLSARPE 180 GPPHLRITGV HQQKEILDQM AHILSEDAEK LDIPFQFNPI VSKLENLDVE KLRVKTGEAL 240 AISSVLQLHA LLATDEEMRK KSPMVPKSSN GHHLQRVLQM NQGTLGELLE KDLVNGYSPS 300 SDSASSSPLS SNASAKLDSF LNALWGLSPK IMVVAEQDSN HNGANLMERL SESLYFYAAL 360 FDCLESTLPR TSVERLKVEK MLFGEEIKNI IACEGVERKE RHEKLEKWIQ RFDLAGFGNV 420 ALSYYAMLQA KRLLQNRSCD GYKIKEENGC IVICWQDRAL FSVSAWRCRR * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-60 | 29 | 469 | 1 | 380 | Protein SCARECROW |
5b3h_D | 2e-60 | 29 | 469 | 1 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027079709.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A068UJK6 | 0.0 | A0A068UJK6_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400011839 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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