PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g05320
Common NameGSCOC_T00011438001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 303aa    MW: 31398.3 Da    PI: 9.5846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g05320genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.8e-09106130226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  kt+lC+ +     Ck+Gd+C+FaHg
  Cc01_g05320 106 KTRLCNKYNTAEGCKFGDKCHFAHG 130
                  8***********************8 PP
2zf-CCCH37.83.2e-12269294127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +kt+lC +fa+ G C +GdrC+FaHg+
  Cc01_g05320 269 FKTKLCENFAK-GSCTFGDRCHFAHGE 294
                  69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.4413967IPR000571Zinc finger, CCCH-type
SMARTSM003563.33966IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-54065IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-64164IPR000571Zinc finger, CCCH-type
PfamPF146080.944764No hitNo description
Gene3DG3DSA:4.10.1000.103.1E-14102136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-8103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.094104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.004104131IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-6106130IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.39E-15165246IPR004088K Homology domain, type 1
SMARTSM003224.2E-13174244IPR004087K Homology domain
PROSITE profilePS5008414.194175239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.8E-16175246IPR004088K Homology domain, type 1
PfamPF000132.1E-11177241IPR004088K Homology domain, type 1
CDDcd001053.62E-14177239No hitNo description
Gene3DG3DSA:4.10.1000.105.5E-17266298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-9267298IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-8268294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.403268295IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9269294IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEFGGARKRG RPDGGAATNG NGGIKKSKQE TESFSSGIGS KSKPCTKFFS TSGCQFGEGC  60
HFLHYVPGGI KAVTQILGSN PALPAASRNP VVPPSFPDGS SPPAVKTRLC NKYNTAEGCK  120
FGDKCHFAHG AWELGKPTAP VHEDPRATGP LPGRFGGRME STPPDFGAAG SFGASATAKI  180
SVDASLAGAI IGKGGVNSKH ICRTTGAKLA IRDHDSDPNS KNIELEGTFD QIKLATQMVR  240
ELIANVSSAA RPPLKNHGGP KGSAPASNFK TKLCENFAKG SCTFGDRCHF AHGEEELRSS  300
GI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027089825.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-114C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A068VA910.0A0A068VA91_COFCA; Uncharacterized protein
STRINGcassava4.1_012715m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-62C3H family protein