PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g05110
Common NameGSCOC_T00028601001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 330aa    MW: 36650.3 Da    PI: 9.652
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g05110genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.7e-104184245
                 XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                 ++ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Cc01_g05110 41 RDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQEL 84
                 567899*************************9888888777655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.6E-83787No hitNo description
SMARTSM003382.4E-840103IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4614286IPR004827Basic-leucine zipper domain
PfamPF001703.5E-74385IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.63E-74487No hitNo description
PROSITE patternPS0003604762IPR004827Basic-leucine zipper domain
PfamPF141442.1E-31127201IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MADVSPRTDT STDASTEDKN SRFHNNQGLA VVASDGSDKS RDQKTLRRLA QNREAARKSR  60
LRKKAYVQQL ESSRMKLTQL EQELQRARQQ GIFISSSGDQ SQSMSGNGAL AFDVEYARWL  120
EEHNRRINEL RGAVNSHAGD GELRIIVDGI LAHYDDIFRI KADAAKADVF HILSGMWKTP  180
AERCFLWLGG FRSSELLKLL INQLEPLTEQ QLLAINNLQQ SSQQAEDALS QGMEALQQSL  240
AETLAGSLGP SGGSTGNVAN YMGQMAMAMG KLGTLEGFIR QADNLRQQTL QQMHRILTTR  300
QSARALLAIS DYFSRLRALS SLWLARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078852.10.0transcription factor TGA2.2-like isoform X1
RefseqXP_027078862.10.0transcription factor TGA2.2-like isoform X1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A068UNV80.0A0A068UNV8_COFCA; Uncharacterized protein
STRINGMigut.F00128.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-142TGACG motif-binding factor 6