PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g05000 | ||||||||
Common Name | GSCOC_T00028577001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | G2-like | ||||||||
Protein Properties | Length: 104aa MW: 11470.4 Da PI: 10.8748 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.8 | 2e-27 | 26 | 80 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWt LH++Fv+av++LGG+ +AtPk+i+ m+++ ++ +h+kSHLQkYRl Cc01_g05000 26 KPRIRWTAGLHNCFVKAVDRLGGPFEATPKEIMMQMDIPEVATSHIKSHLQKYRL 80 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 24 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.33E-13 | 24 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-22 | 26 | 81 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MAAKGNDTKK LHTSDRQLQV AENTRKPRIR WTAGLHNCFV KAVDRLGGPF EATPKEIMMQ 60 MDIPEVATSH IKSHLQKYRL RMGCNIGTAA DSTVARKGKI PAK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027122640.1 | 6e-67 | myb family transcription factor PHL8-like | ||||
Swissprot | F4I274 | 1e-15 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A068ULX7 | 1e-71 | A0A068ULX7_COFCA; Uncharacterized protein | ||||
STRING | XP_009765181.1 | 4e-20 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12062 | 16 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G06020.1 | 7e-21 | G2-like family protein |
Publications ? help Back to Top | |||
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