PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g04310

Common Name

GSCOC_T00039317001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 507aa MW: 57483.3 Da PI: 5.8662

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g04310	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	355	1.1e-108	146	502	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL++cA+av+ d+ a++lL+++++++sp+gdp++Rla +f++AL+arla+++++ly+al+++++s ++ l a+ ++ e++P+ ++s++ a Cc01_g04310 146 LRDLLTRCAHAVAIYDNWTANELLKQIRQHSSPYGDPTERLAYCFANALEARLAGMGTTLYSALTTTRAS---AADILRAYGAYLEICPFQRMSNIFA 240 6899**********************************************************999998...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N+ I + +++ +r+HiiDf+i +G+QWp+L++ ++ Rp+gpp+lRiTgv+ p++g +e++eetg rLa++A++++vpfefn+ vakr+++++ e+L Cc01_g04310 241 NKSIAKQTSTVTRIHIIDFGILYGFQWPCLIHGISLRPGGPPKLRITGVDLPQPGfrPAERIEETGGRLANYARRFNVPFEFNA-VAKRWDTITAEDL 337 **************************************************9*************************.8******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+++Vn+ rd+v++l+k+++P+++v+ + ++++ F++rf eal+++s+lfd++ea+lpre+++r++ E+e++gr Cc01_g04310 338 AIDEDEMVVVNCLP---------------RDSVMNLIKKINPEMFVHGVLNGTYGAPFFVTRFKEALYHFSSLFDMFEATLPREDQNRSMFEKEVIGR 420 ********87...............688************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 e++nv+aceg+er+er ++++W+ r ++aGFk++pl+++++ ++++ ++ ++++ + ++ + +++++gWk+r ++++S+W+ Cc01_g04310 421 EVMNVIACEGTERIERPDSYKQWQVRNQRAGFKQLPLNSEIMREIRAKVKSYYNKDFLIDADGAWMLQGWKGRVIYALSCWK 502 *************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.251	120	482	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.9E-106	146	502	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MDTLFHGDGQ SIKSANEFPQ LDFDQQHSLS QGNLVNECQF DHLFNNVTGL SKLSSHLDVN 60 STPCEVGDDS PVEGDYFDGV FKYLQRMLME EDDLLDKPCM LQDCLALQAA EKSFYEVLNE 120 NQPSSPSRGR PRAGQKRDSI RELVDLRDLL TRCAHAVAIY DNWTANELLK QIRQHSSPYG 180 DPTERLAYCF ANALEARLAG MGTTLYSALT TTRASAADIL RAYGAYLEIC PFQRMSNIFA 240 NKSIAKQTST VTRIHIIDFG ILYGFQWPCL IHGISLRPGG PPKLRITGVD LPQPGFRPAE 300 RIEETGGRLA NYARRFNVPF EFNAVAKRWD TITAEDLAID EDEMVVVNCL PRDSVMNLIK 360 KINPEMFVHG VLNGTYGAPF FVTRFKEALY HFSSLFDMFE ATLPREDQNR SMFEKEVIGR 420 EVMNVIACEG TERIERPDSY KQWQVRNQRA GFKQLPLNSE IMREIRAKVK SYYNKDFLID 480 ADGAWMLQGW KGRVIYALSC WKPAGL*

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MDTLFHGDGQ SIKSANEFPQ LDFDQQHSLS QGNLVNECQF DHLFNNVTGL SKLSSHLDVN  60
STPCEVGDDS PVEGDYFDGV FKYLQRMLME EDDLLDKPCM LQDCLALQAA EKSFYEVLNE  120
NQPSSPSRGR PRAGQKRDSI RELVDLRDLL TRCAHAVAIY DNWTANELLK QIRQHSSPYG  180
DPTERLAYCF ANALEARLAG MGTTLYSALT TTRASAADIL RAYGAYLEIC PFQRMSNIFA  240
NKSIAKQTST VTRIHIIDFG ILYGFQWPCL IHGISLRPGG PPKLRITGVD LPQPGFRPAE  300
RIEETGGRLA NYARRFNVPF EFNAVAKRWD TITAEDLAID EDEMVVVNCL PRDSVMNLIK  360
KINPEMFVHG VLNGTYGAPF FVTRFKEALY HFSSLFDMFE ATLPREDQNR SMFEKEVIGR  420
EVMNVIACEG TERIERPDSY KQWQVRNQRA GFKQLPLNSE IMREIRAKVK SYYNKDFLID  480
ADGAWMLQGW KGRVIYALSC WKPAGL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-49	152	503	25	380	Protein SCARECROW
5b3h_A	4e-49	152	503	24	379	Protein SCARECROW
5b3h_D	4e-49	152	503	24	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096660.1	0.0	scarecrow-like protein 33
Swissprot	Q9XE58	1e-162	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A068V0S2	0.0	A0A068V0S2_COFCA; Uncharacterized protein
STRING	PGSC0003DMT400078286	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-164	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]