PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g04290

Common Name

GSCOC_T00039312001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

GRAS

Protein Properties

Length: 726aa MW: 81770.9 Da PI: 4.775

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g04290	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	42.1	1.4e-13	383	451	2	70
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets 70 lLl+cA+ v ++d + a+ L+ ++++a ++gdp qRla f++AL+arla++++ely+++++++ s Cc01_g04290 383 SALLLNCAHSVVADDRRTANDQLKLIKQHACSTGDPQQRLAILFANALEARLAGNGPELYATVKSKRRS 451 579**********************************************************99888765 PP
2	GRAS	260.8	4.7e-80	452	722	105	373
GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200 a+e+++++Hi+Df+i++G+QWp+L+q+L++R++gpp+lRiTg++ p++g +e++eetg rLak++e+++vpf ++++ k++e+++leeL++ ++E Cc01_g04290 452 AAEEAKTLHIVDFGIGYGFQWPSLIQQLSNRDGGPPKLRITGIEYPKPGfrPAERIEETGCRLAKYCERFNVPFVYQAIPIKNWEKIRLEELKLTRDE 549 77899*****************************************9********************************************* PP GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +++Vn++l+ +++ld+ v+ + +rd+vL+l+++++P ++v ++ ++ Fl+r eal ++sa+fd l+ +lp+++++r k E+e++g e++n++ Cc01_g04290 550 VIVVNCQLRFKNMLDQVVDGDCPRDAVLRLIREINPAIFVSDVLSGQLCTPFFLTRCREALFFFSAVFDFLHHNLPPDDKQRLKFEQEFMGTEVMNII 647 ********************************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg+er+er et+++W+ r ++aGFk +pl+++ k+ ++ +++ + + + +ee g++++gWk++ ++++S+W Cc01_g04290 648 ACEGSERVERAETYKQWQIRYKRAGFKMLPLNQDLKKELRSKVKEGYHKDFLFDEEGGWILQGWKGKIITACSCW 722 *****************************************99888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	44.325	356	703	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.8E-11	383	451	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-77	452	722	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 726 aa Download sequence Send to blast
MTINRIMDHQ FPNLVNSVND SEFGNGINLA SSEQSNLDIE FEKFWNSVNG FEFNSSVVFP 60 SFEQQPLSSC TFAPLYNVSS EVDFPGDYES YPMLKYINQM LMEDFSEEQP NISPDPLALK 120 AAEKSLYHVL GKSYPPPHEP VAALDQIAES SQESTDSCSQ HYTDGCDTDT STIDSQPILD 180 PVESSGKGHQ PWDKYFKSSF QTSSLDSVHS LSSSSNSGDG LIGFLTNENM ISSSVSDSDT 240 ILQFKKGLEE GNKFLPAGKL MNIDLDKYTL PSKLQDVGLV TTGKKDEEYL RTGMRGRKHQ 300 HQDDGDAHLG RKYKQSAVSM EEVELSEAFD RILLFGDSRG QDLCCNVDVE QPTELSEALD 360 HESDVSKSTE ERQGTDNEAL DLSALLLNCA HSVVADDRRT ANDQLKLIKQ HACSTGDPQQ 420 RLAILFANAL EARLAGNGPE LYATVKSKRR SAAEEAKTLH IVDFGIGYGF QWPSLIQQLS 480 NRDGGPPKLR ITGIEYPKPG FRPAERIEET GCRLAKYCER FNVPFVYQAI PIKNWEKIRL 540 EELKLTRDEV IVVNCQLRFK NMLDQVVDGD CPRDAVLRLI REINPAIFVS DVLSGQLCTP 600 FFLTRCREAL FFFSAVFDFL HHNLPPDDKQ RLKFEQEFMG TEVMNIIACE GSERVERAET 660 YKQWQIRYKR AGFKMLPLNQ DLKKELRSKV KEGYHKDFLF DEEGGWILQG WKGKIITACS 720 CWVPA*

Sequence ? help Back to Top

Protein Sequence Length: 726 aa Download sequence Send to blast

MTINRIMDHQ FPNLVNSVND SEFGNGINLA SSEQSNLDIE FEKFWNSVNG FEFNSSVVFP  60
SFEQQPLSSC TFAPLYNVSS EVDFPGDYES YPMLKYINQM LMEDFSEEQP NISPDPLALK  120
AAEKSLYHVL GKSYPPPHEP VAALDQIAES SQESTDSCSQ HYTDGCDTDT STIDSQPILD  180
PVESSGKGHQ PWDKYFKSSF QTSSLDSVHS LSSSSNSGDG LIGFLTNENM ISSSVSDSDT  240
ILQFKKGLEE GNKFLPAGKL MNIDLDKYTL PSKLQDVGLV TTGKKDEEYL RTGMRGRKHQ  300
HQDDGDAHLG RKYKQSAVSM EEVELSEAFD RILLFGDSRG QDLCCNVDVE QPTELSEALD  360
HESDVSKSTE ERQGTDNEAL DLSALLLNCA HSVVADDRRT ANDQLKLIKQ HACSTGDPQQ  420
RLAILFANAL EARLAGNGPE LYATVKSKRR SAAEEAKTLH IVDFGIGYGF QWPSLIQQLS  480
NRDGGPPKLR ITGIEYPKPG FRPAERIEET GCRLAKYCER FNVPFVYQAI PIKNWEKIRL  540
EELKLTRDEV IVVNCQLRFK NMLDQVVDGD CPRDAVLRLI REINPAIFVS DVLSGQLCTP  600
FFLTRCREAL FFFSAVFDFL HHNLPPDDKQ RLKFEQEFMG TEVMNIIACE GSERVERAET  660
YKQWQIRYKR AGFKMLPLNQ DLKKELRSKV KEGYHKDFLF DEEGGWILQG WKGKIITACS  720
CWVPA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-29	386	722	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027096278.1	0.0	scarecrow-like protein 33
TrEMBL	A0A068V0L9	0.0	A0A068V0L9_COFCA; Uncharacterized protein
STRING	XP_009606498.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-168	SCARECROW-like 14