PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g04280
Common NameGSCOC_T00039310001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 1361aa    MW: 153753 Da    PI: 6.2824
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g04280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.71.1e-1002756394370
         GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                  lL++cA++v+++d++ a++ L+++++++s  gdp qRla+ +++AL+arla+++  l  al++++ s   ++++l+a++++  +sP+     + aN++
  Cc01_g04280 275 LLISCAQFVAADDHRTATEKLKQIRQHVSCLGDPHQRLAFILVNALEARLAGTGRDLHVALTSKRIS---TADQLKAYRVYL-CSPLRPTFSFFANEM 368
                  8***************************************************999999888888887...899999999865.99**999999***** PP

         GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  Ilea+++++ +Hi+Df+i+ G+QWp+L+q+L++R++gpp+lRiTg++ p++g   +e++++tg+rLak++++++vpfe++++++++++++++eeL++ 
  Cc01_g04280 369 ILEAASRATILHIVDFGITFGFQWPTLIQQLSNRDGGPPKLRITGIDFPQPGfrPAESMQQTGHRLAKYCARFNVPFEYQAIATRNWDKITIEELKLT 466
                  ***************************************************9*****************************9999************* PP

         GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  ++E+laV +++ l+++ d+ v+ e +rd+vL+l++ ++P+++v     a+++++ Fl+rf +al+++ ++fd+++++lpr++ +r+k E+e+lg ++ 
  Cc01_g04280 467 RNEVLAVACQFGLKNISDDMVEGECPRDAVLSLIRAMNPDILVTDVLSAQLSGPFFLTRFRDALSFFFTMFDAIDNNLPRKDAQRRKFEQEFLGTQLL 564
                  ************************************************************************************************** PP

         GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                  n+vaceg +r+er+et++kW++r ++aGF+++pl+++  k+ +  ++k + + ++++e+  +l++gWk++ +++v
  Cc01_g04280 565 NIVACEGLARVERCETYRKWHARYNRAGFRQLPLNQDLLKELRGKVKKAYHKDFMLDEDGCWLLQGWKGKIIIMV 639
                  **************************************************888****************998875 PP

2GRAS351.61.3e-10798813572373
         GRAS    2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97  
                   +  L++cA++v+s+d++ a++ L+ l+++as +gdp qRla+ f++AL+arla++++ l +al++++ +   +seel+al++f  +sP+ ++  + 
  Cc01_g04280  988 IAMLISCAQFVASDDHSTANEQLKLLRQHASRSGDPHQRLAFIFVNALEARLAGNGHDLHAALTSKPMA---TSEELKALRVFL-CSPFRQIYAFF 1079
                   678*********************************************************999999998...89999**99997.9********** PP

         GRAS   98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191 
                   aN++Ilea+++++++Hi+Df+i+ G+QWp+L+q L+++++gpp+lRiTg++ p++g   ++++e+tg+rLak++++++vpfe+++++++++e++++
  Cc01_g04280 1080 ANKMILEAASNATTLHIVDFGITFGFQWPNLIQRLSKKDGGPPKLRITGINFPQPGlrPATKIEQTGHRLAKYCKRFNVPFEYQAIATRNWEKITI 1175
                   *********************************************************9***************************9999******* PP

         GRAS  192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 
                   eeL++k++E+laV +++  +++lde v  e +rd++L+l+++++P+++v     a+++++ Fl rf eal ++s++fd l+++lpr++ +r+k E+
  Cc01_g04280 1176 EELKLKRNEVLAVVFQFDSKNILDELVGNECPRDAILSLIRTMNPDILVTEVLSAQLSGPFFLSRFREALFFFSTIFDVLDNNLPRKDGQRMKFEQ 1271
                   ************************************************************************************************ PP

         GRAS  288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 
                   e+lg ei n+vaceg +r+er+et+++W++r ++aGF+++pl+++ +k+ ++  ++ + + ++ +e+  +l++gWk++ + ++S+W
  Cc01_g04280 1272 EFLGTEIFNIVACEGLARVERCETYKQWQARYKRAGFRQLPLNQDLMKELRSKTKEGYHKDFMFDEDGCWLLQGWKGKVICACSSW 1357
                   ********************************************************99888************************* PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.616246623IPR005202Transcription factor GRAS
PfamPF035143.9E-98275639IPR005202Transcription factor GRAS
PROSITE profilePS5098558.6839611338IPR005202Transcription factor GRAS
PfamPF035144.4E-1059881357IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 1361 aa     Download sequence    Send to blast
MLMEENLEEQ QSMSTDPLAL QAAEKSLYEI LGKNYPHSPR ATFVTALENN AHTPDGFSES  60
SSNHVTNCSD SGSNSAASWP IPELSELSGK QVQCLHMLKN STICGNGQVA SLTDENLIPS  120
FYSNHETMML FKKGLEEGKK FLPSGNQLIV DLDKHTLSLK LELLAEKKKD EVEKLAEISG  180
GRKHQNQDDD DSLGGRSNKQ SATSEEEVEL SELLDRVLLH ADSKGLEADS DVDVEQPNGS  240
FKTLSRSKFL HRSRVGMSPE KRLGAEGEAL DLFGLLISCA QFVAADDHRT ATEKLKQIRQ  300
HVSCLGDPHQ RLAFILVNAL EARLAGTGRD LHVALTSKRI STADQLKAYR VYLCSPLRPT  360
FSFFANEMIL EAASRATILH IVDFGITFGF QWPTLIQQLS NRDGGPPKLR ITGIDFPQPG  420
FRPAESMQQT GHRLAKYCAR FNVPFEYQAI ATRNWDKITI EELKLTRNEV LAVACQFGLK  480
NISDDMVEGE CPRDAVLSLI RAMNPDILVT DVLSAQLSGP FFLTRFRDAL SFFFTMFDAI  540
DNNLPRKDAQ RRKFEQEFLG TQLLNIVACE GLARVERCET YRKWHARYNR AGFRQLPLNQ  600
DLLKELRGKV KKAYHKDFML DEDGCWLLQG WKGKIIIMVY CFCKINGNQS EHFLEIKDWE  660
LRNILWRKLK LHKEFNFFFL NCVKKETDYQ GGTEGISFLE SLDPVNGFGF DGASVYASLR  720
SEDPSSYAPF YNMSSELDFP DEHEFYPVLK YINQMLMEEN VDEQPSMSHD PLAIQAAEKS  780
FYEILGENYS PSPLETSVAA LERNAQTPEG FSESSSKDSR NSSRSSTSAA PSPSSFQTNS  840
IESPPQLKNL TICGDGQVRS LTDKNLISCF YSDNRTMLQF KKGLEEGNKF LPTGNQLEEK  900
LNNGLQGRKH QYLDDSDSYI GRSNKQSALY EEDAELSETI ERALLYGDIK PSHGFSETLH  960
NDQLLHRSHV GKSQTERQVT DGGPFDLIAM LISCAQFVAS DDHSTANEQL KLLRQHASRS  1020
GDPHQRLAFI FVNALEARLA GNGHDLHAAL TSKPMATSEE LKALRVFLCS PFRQIYAFFA  1080
NKMILEAASN ATTLHIVDFG ITFGFQWPNL IQRLSKKDGG PPKLRITGIN FPQPGLRPAT  1140
KIEQTGHRLA KYCKRFNVPF EYQAIATRNW EKITIEELKL KRNEVLAVVF QFDSKNILDE  1200
LVGNECPRDA ILSLIRTMNP DILVTEVLSA QLSGPFFLSR FREALFFFST IFDVLDNNLP  1260
RKDGQRMKFE QEFLGTEIFN IVACEGLARV ERCETYKQWQ ARYKRAGFRQ LPLNQDLMKE  1320
LRSKTKEGYH KDFMFDEDGC WLLQGWKGKV ICACSSWVPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-4027613574374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027173576.10.0scarecrow-like protein 14 isoform X2
RefseqXP_027179912.10.0scarecrow-like protein 14 isoform X2
TrEMBLA0A068V0B30.0A0A068V0B3_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-162SCARECROW-like 14