PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc01_g03550 | ||||||||
Common Name | GSCOC_T00033091001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 871aa MW: 95714.6 Da PI: 9.4496 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 48.1 | 2.9e-15 | 795 | 845 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+ + +g+WvAeIrdp++ +k+++lg+++t eeA +++a+ +++g Cc01_g03550 795 KKFHGVRQWR-WGSWVAEIRDPVK---QKQVWLGTYDTTEEATMPYDHAAIRFRG 845 589***9887.**********654...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF08263 | 3.9E-10 | 9 | 48 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
Gene3D | G3DSA:3.80.10.10 | 1.2E-20 | 9 | 129 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SuperFamily | SSF52058 | 8.62E-51 | 25 | 338 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00369 | 29 | 75 | 99 | IPR003591 | Leucine-rich repeat, typical subtype |
Gene3D | G3DSA:3.80.10.10 | 1.5E-54 | 130 | 338 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00369 | 210 | 143 | 166 | IPR003591 | Leucine-rich repeat, typical subtype |
SuperFamily | SSF52058 | 2.3E-55 | 234 | 566 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00369 | 85 | 239 | 263 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 70 | 287 | 311 | IPR003591 | Leucine-rich repeat, typical subtype |
Gene3D | G3DSA:3.80.10.10 | 4.2E-44 | 340 | 540 | IPR032675 | Leucine-rich repeat domain, L domain-like |
SMART | SM00369 | 91 | 358 | 382 | IPR003591 | Leucine-rich repeat, typical subtype |
Pfam | PF00560 | 0.32 | 360 | 382 | IPR001611 | Leucine-rich repeat |
SMART | SM00369 | 57 | 406 | 430 | IPR003591 | Leucine-rich repeat, typical subtype |
SMART | SM00369 | 16 | 454 | 478 | IPR003591 | Leucine-rich repeat, typical subtype |
Pfam | PF00560 | 1.6 | 481 | 502 | IPR001611 | Leucine-rich repeat |
SuperFamily | SSF56112 | 7.65E-54 | 585 | 778 | IPR011009 | Protein kinase-like domain |
Gene3D | G3DSA:3.30.200.20 | 2.4E-23 | 589 | 665 | No hit | No description |
PROSITE profile | PS50011 | 31.552 | 601 | 870 | IPR000719 | Protein kinase domain |
Pfam | PF00069 | 6.4E-37 | 606 | 780 | IPR000719 | Protein kinase domain |
PROSITE pattern | PS00107 | 0 | 607 | 630 | IPR017441 | Protein kinase, ATP binding site |
Gene3D | G3DSA:1.10.510.10 | 2.4E-30 | 666 | 779 | No hit | No description |
PROSITE pattern | PS00109 | 0 | 725 | 737 | IPR008266 | Tyrosine-protein kinase, active site |
CDD | cd00018 | 5.08E-25 | 795 | 853 | No hit | No description |
PROSITE profile | PS51032 | 20.402 | 796 | 853 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-25 | 796 | 853 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-29 | 796 | 859 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.9E-9 | 796 | 845 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-18 | 796 | 853 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-7 | 797 | 808 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-7 | 835 | 855 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 871 aa Download sequence Send to blast |
MHAASSTGSE GKALLRWKAS LDNYSQSKLS SWSSSANPCS AWDGVRCNKA GRVSVINITG 60 SGIKGTLDHL NFSSLPHLTT IELSQNALHG TIPSNIGNLS RLTYLAFWSN QLSGAIPIEI 120 SQLTNLRFFN KLSGWIPEEI GKLKSLTKLS LGDNTLTGRI PLSFGNLSDL TLLYLFQNFL 180 SGPIPEEIGK LRSLIECSFG QNLLTGSIPQ SIGNLGNLIL LFLFNNFLSG PIPEEIGNLL 240 SLEDLEFGNN NLTSKIPNSI GNLEKITRLS LFGNKLSGHI PSAIGNLTKL TDLQLSQNNL 300 YGAIPLELGT LKLLAYIRIF ENQLSGALPE GFNNLTHLNL GISKNYLTGR IPTGLGMISR 360 LQKLHLSSNH LHGKIPSSLG KLTLLLELKL HNNNLSGNIP TEIGQMSRLL NLSLSANNLS 420 GSIPEQIGNC TQLLDLNLSQ NALVGNIPSQ IGSLPSLATL DLSQNMLESK LPLELGEMKS 480 IETMNLSHNR ISGSIPKSFD HCFSLISIDI SYNQLEGPLP NISAFQKAPF DSLRNNKGLC 540 GSVTGLKPCS QSTQKNTSRR TTKRMIFLIN KPQEFTRNMF SAWSFDGKMV YESIIDAIEN 600 FDPKYCIGVG AFGSVFRAEL PNGQVVAVKK LHETDGGALR RPKDFANEIR ALTNIRHRNI 660 VKLYGFCSNV QHTFLVYEFL EGGSLMHLLS NDETAAKCEW IKRVSIVKDV ANALSYMHQN 720 CSPSIIHRDI SSKNILLDSE YQAHISDFGT ARILRPDSSH WTSFAGTYGY AAPVVNKRKG 780 KGTVKDESKD ENKCKKFHGV RQWRWGSWVA EIRDPVKQKQ VWLGTYDTTE EATMPYDHAA 840 IRFRGPKAIT NFPPPSPVKN ELSSITSAVK * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4mn8_A | 8e-85 | 10 | 550 | 6 | 769 | LRR receptor-like serine/threonine-protein kinase FLS2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027166821.1 | 0.0 | probable leucine-rich repeat receptor-like protein kinase At1g35710 | ||||
TrEMBL | A0A068URL3 | 0.0 | A0A068URL3_COFCA; Uncharacterized protein | ||||
STRING | XP_009599912.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11140.1 | 8e-24 | cytokinin response factor 1 |