PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g03550
Common NameGSCOC_T00033091001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 871aa    MW: 95714.6 Da    PI: 9.4496
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g03550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.12.9e-15795845155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr+ + +g+WvAeIrdp++   +k+++lg+++t eeA   +++a+ +++g
  Cc01_g03550 795 KKFHGVRQWR-WGSWVAEIRDPVK---QKQVWLGTYDTTEEATMPYDHAAIRFRG 845
                  589***9887.**********654...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF082633.9E-10948IPR013210Leucine-rich repeat-containing N-terminal, plant-type
Gene3DG3DSA:3.80.10.101.2E-209129IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520588.62E-5125338IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369297599IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.101.5E-54130338IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369210143166IPR003591Leucine-rich repeat, typical subtype
SuperFamilySSF520582.3E-55234566IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036985239263IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036970287311IPR003591Leucine-rich repeat, typical subtype
Gene3DG3DSA:3.80.10.104.2E-44340540IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036991358382IPR003591Leucine-rich repeat, typical subtype
PfamPF005600.32360382IPR001611Leucine-rich repeat
SMARTSM0036957406430IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036916454478IPR003591Leucine-rich repeat, typical subtype
PfamPF005601.6481502IPR001611Leucine-rich repeat
SuperFamilySSF561127.65E-54585778IPR011009Protein kinase-like domain
Gene3DG3DSA:3.30.200.202.4E-23589665No hitNo description
PROSITE profilePS5001131.552601870IPR000719Protein kinase domain
PfamPF000696.4E-37606780IPR000719Protein kinase domain
PROSITE patternPS001070607630IPR017441Protein kinase, ATP binding site
Gene3DG3DSA:1.10.510.102.4E-30666779No hitNo description
PROSITE patternPS001090725737IPR008266Tyrosine-protein kinase, active site
CDDcd000185.08E-25795853No hitNo description
PROSITE profilePS5103220.402796853IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-25796853IPR001471AP2/ERF domain
SMARTSM003805.3E-29796859IPR001471AP2/ERF domain
PfamPF008476.9E-9796845IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-18796853IPR016177DNA-binding domain
PRINTSPR003672.8E-7797808IPR001471AP2/ERF domain
PRINTSPR003672.8E-7835855IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MHAASSTGSE GKALLRWKAS LDNYSQSKLS SWSSSANPCS AWDGVRCNKA GRVSVINITG  60
SGIKGTLDHL NFSSLPHLTT IELSQNALHG TIPSNIGNLS RLTYLAFWSN QLSGAIPIEI  120
SQLTNLRFFN KLSGWIPEEI GKLKSLTKLS LGDNTLTGRI PLSFGNLSDL TLLYLFQNFL  180
SGPIPEEIGK LRSLIECSFG QNLLTGSIPQ SIGNLGNLIL LFLFNNFLSG PIPEEIGNLL  240
SLEDLEFGNN NLTSKIPNSI GNLEKITRLS LFGNKLSGHI PSAIGNLTKL TDLQLSQNNL  300
YGAIPLELGT LKLLAYIRIF ENQLSGALPE GFNNLTHLNL GISKNYLTGR IPTGLGMISR  360
LQKLHLSSNH LHGKIPSSLG KLTLLLELKL HNNNLSGNIP TEIGQMSRLL NLSLSANNLS  420
GSIPEQIGNC TQLLDLNLSQ NALVGNIPSQ IGSLPSLATL DLSQNMLESK LPLELGEMKS  480
IETMNLSHNR ISGSIPKSFD HCFSLISIDI SYNQLEGPLP NISAFQKAPF DSLRNNKGLC  540
GSVTGLKPCS QSTQKNTSRR TTKRMIFLIN KPQEFTRNMF SAWSFDGKMV YESIIDAIEN  600
FDPKYCIGVG AFGSVFRAEL PNGQVVAVKK LHETDGGALR RPKDFANEIR ALTNIRHRNI  660
VKLYGFCSNV QHTFLVYEFL EGGSLMHLLS NDETAAKCEW IKRVSIVKDV ANALSYMHQN  720
CSPSIIHRDI SSKNILLDSE YQAHISDFGT ARILRPDSSH WTSFAGTYGY AAPVVNKRKG  780
KGTVKDESKD ENKCKKFHGV RQWRWGSWVA EIRDPVKQKQ VWLGTYDTTE EATMPYDHAA  840
IRFRGPKAIT NFPPPSPVKN ELSSITSAVK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mn8_A8e-85105506769LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027166821.10.0probable leucine-rich repeat receptor-like protein kinase At1g35710
TrEMBLA0A068URL30.0A0A068URL3_COFCA; Uncharacterized protein
STRINGXP_009599912.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-24cytokinin response factor 1