PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g01650

Common Name

GSCOC_T00037868001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 1127aa MW: 126104 Da PI: 9.6171

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g01650	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.8	2.1e-07	46	80	3	39
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 W++eE ++++a +++G + +k++a+ + +R++ + Cc01_g01650 46 QWSKEEITRFYEAYRKYGQD-FKKVAAAVR-NRSGDM 80 6***************99.*****.9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.35E-8	38	88	IPR009057	Homeodomain-like
Pfam	PF00249	1.8E-6	46	81	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-4	47	81	No hit	No description
SMART	SM01135	7.3E-55	633	734	IPR033471	DIRP domain
Pfam	PF06584	2.7E-31	633	733	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1127 aa Download sequence Send to blast
MAPARKSRSV NKRHLSINEV SPIKGSSNGR RNSKRKRKPT NKLGPQWSKE EITRFYEAYR 60 KYGQDFKKVA AAVRNRSGDM VEALFSMNRA YLALPEGTAS VIGLVAMMTD YYSNLAITDS 120 EQESNDGAGP SRKAQRHTEG KGQPSTTKAS DGHFSRSPTV TAGYGFQSLL KKKRSGGSRA 180 RAVGKRTPRV PVAYSYENNK GEKFFSTTRR GDDDVAHEIA LALTEASQRG GSPQVSQTPS 240 RRTESVMSSP ARNAETRRAE LKMANYKHVE SDVDEEELEG SMEADTGELS RYKTYLKQTG 300 RVGSLVPKGR RFDGKRLDVD DSSDNHLEDT REACSGTEEG QRFGAARYAD ARNSKSSYQG 360 PRKRSKKVLF RRDEDSAFDA LQTLADLSLM LPAEANEDEL MVEIKDEHVD HVDESGSLEA 420 IPAPHQRDKR RSSGQKIKGD QSTMARLEMA STKIPKSGKM SLYDVSVVPE VKDEVYPSKS 480 IRKKPKILTS KIRKSESHVN SQLSEPQEAE TRDLGKMIKN KKSSHSSSPK LVKNVDHSSS 540 ADPRIEGSDS AQSTIQAPPA NQVNLLTRVR SRRKRDLNKP QIQKDLKLSE KISNDRSNVP 600 LPSVNDTAFS VKGKLTNCLS NHRLRRWCAY EWFYNAIDYP WFAKREFVEY LYHVGLGHVP 660 RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNKYRDSVR THYTELRKGI REGLPTDLAR 720 PLTVGQRVIA IHPKTREIHD GSVLTVDHSR CRVQFDRPEL GVEFVMDVDC MPLDPMENIP 780 TMLARHIAVD KFFENYNELR MNEQAKEYIK ISSGDNVENI NGLSNLSSST YPVTNLLKQT 840 KVAPEDANLQ IRAVQMETPT NTYSQPCIPA QVQAKEADVQ ALAQLTRALD KKEAVVSELK 900 RMNDDVVENC SLKESESFKK QYAAVLVQLH EVSSALICLR QRNTYQGNIS LGWPRPVANL 960 GDPGSMLSSL DRSTSQSQDS GSHISEIIES SRKKARSMVD VALQAMSSLK GRENTFEKIE 1020 EAIDYVNEQL PSDDSSVPAA PDPNLKNATD RNEAQIPSEL ITQCVATLLM IQKCTERQFP 1080 PADVAQILDS AVTSLKPCCP QNLPVYTEIQ KCMGIVRNQI LALIPT*

Sequence ? help Back to Top

Protein Sequence Length: 1127 aa Download sequence Send to blast

MAPARKSRSV NKRHLSINEV SPIKGSSNGR RNSKRKRKPT NKLGPQWSKE EITRFYEAYR  60
KYGQDFKKVA AAVRNRSGDM VEALFSMNRA YLALPEGTAS VIGLVAMMTD YYSNLAITDS  120
EQESNDGAGP SRKAQRHTEG KGQPSTTKAS DGHFSRSPTV TAGYGFQSLL KKKRSGGSRA  180
RAVGKRTPRV PVAYSYENNK GEKFFSTTRR GDDDVAHEIA LALTEASQRG GSPQVSQTPS  240
RRTESVMSSP ARNAETRRAE LKMANYKHVE SDVDEEELEG SMEADTGELS RYKTYLKQTG  300
RVGSLVPKGR RFDGKRLDVD DSSDNHLEDT REACSGTEEG QRFGAARYAD ARNSKSSYQG  360
PRKRSKKVLF RRDEDSAFDA LQTLADLSLM LPAEANEDEL MVEIKDEHVD HVDESGSLEA  420
IPAPHQRDKR RSSGQKIKGD QSTMARLEMA STKIPKSGKM SLYDVSVVPE VKDEVYPSKS  480
IRKKPKILTS KIRKSESHVN SQLSEPQEAE TRDLGKMIKN KKSSHSSSPK LVKNVDHSSS  540
ADPRIEGSDS AQSTIQAPPA NQVNLLTRVR SRRKRDLNKP QIQKDLKLSE KISNDRSNVP  600
LPSVNDTAFS VKGKLTNCLS NHRLRRWCAY EWFYNAIDYP WFAKREFVEY LYHVGLGHVP  660
RLTRVEWGVI RSSLGKPRRF SQQFLKEEKE KLNKYRDSVR THYTELRKGI REGLPTDLAR  720
PLTVGQRVIA IHPKTREIHD GSVLTVDHSR CRVQFDRPEL GVEFVMDVDC MPLDPMENIP  780
TMLARHIAVD KFFENYNELR MNEQAKEYIK ISSGDNVENI NGLSNLSSST YPVTNLLKQT  840
KVAPEDANLQ IRAVQMETPT NTYSQPCIPA QVQAKEADVQ ALAQLTRALD KKEAVVSELK  900
RMNDDVVENC SLKESESFKK QYAAVLVQLH EVSSALICLR QRNTYQGNIS LGWPRPVANL  960
GDPGSMLSSL DRSTSQSQDS GSHISEIIES SRKKARSMVD VALQAMSSLK GRENTFEKIE  1020
EAIDYVNEQL PSDDSSVPAA PDPNLKNATD RNEAQIPSEL ITQCVATLLM IQKCTERQFP  1080
PADVAQILDS AVTSLKPCCP QNLPVYTEIQ KCMGIVRNQI LALIPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	35	RRNSKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075043.1	0.0	protein ALWAYS EARLY 3-like
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A068UX25	0.0	A0A068UX25_COFCA; Uncharacterized protein
STRING	XP_009595580.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3312	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]