PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g00840
Common NameGSCOC_T00011079001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 298aa    MW: 33008.5 Da    PI: 7.0169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g00840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-172473255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++ GVr+++ +g+WvAeI+  +   ++ r +lg+f+taeeAa+a+++a+  l+g
  Cc01_g00840 24 KFVGVRQRP-SGKWVAEIKNTT---QKIRMWLGTFDTAEEAAQAYDEAACLLRG 73
                 799******.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.3612481IPR001471AP2/ERF domain
PfamPF008476.1E-132473IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-192481IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-272481IPR001471AP2/ERF domain
SMARTSM003801.4E-352487IPR001471AP2/ERF domain
CDDcd000181.72E-312480No hitNo description
PRINTSPR003678.3E-82536IPR001471AP2/ERF domain
PRINTSPR003678.3E-84763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELQFQKQGT YMVDRNSSSS SKRKFVGVRQ RPSGKWVAEI KNTTQKIRMW LGTFDTAEEA  60
AQAYDEAACL LRGSNTRTNF MNHVPCNPAL SLKIRNLLNQ KKGRLNKITS LASTASNKTA  120
TESSSRTISR TSSSSSTSQS SASGSSFSSS SSNSSDSSAA VLTTIQAQTK LFDDAYKPDL  180
SCFMAAGGYE LASSSDQFDY TTGRDGSLFS TFASDFDRIL LGQQDAGFEL PKKDISEMMS  240
DHQTQYYHQI PDFEHMKVQR QISASLYAMN GVSEYWENVH DCNDSFWDLP YQMFCPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1324801471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115963.10.0ethylene-responsive transcription factor ERN1-like
TrEMBLA0A068VAH90.0A0A068VAH9_COFCA; Uncharacterized protein
STRINGXP_009804161.15e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20182261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-34related to AP2 11