PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g33880
Common NameGSCOC_T00008852001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 285aa    MW: 32106.8 Da    PI: 7.9399
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g33880genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.86.8e-2440134186
     trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  rWtkqe+l L+e+++  e++ rrg+         + +p+W++vs+++r +g++r+p+qC+++w+nl  ++kki+++e++ ++e +s +++ ++l+
  Cc00_g33880  40 RWTKQETLILVEGKNIAESQGRRGRrssslfvtgQHEPKWDSVSSYCRLHGVNRGPVQCRKRWSNLVSDFKKIRTWESQVKEEGESFWVMRNDLR 134
                  8**************9999999986677888888**********************************************9999999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-730107IPR009057Homeodomain-like
PROSITE profilePS500907.13133106IPR017877Myb-like domain
SuperFamilySSF466891.73E-537114IPR009057Homeodomain-like
PfamPF138372.6E-1139129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAPGPNDRLE KATSSASVLD EEHQAVERTN SENKSTRHPR WTKQETLILV EGKNIAESQG  60
RRGRRSSSLF VTGQHEPKWD SVSSYCRLHG VNRGPVQCRK RWSNLVSDFK KIRTWESQVK  120
EEGESFWVMR NDLRREKKLP GHFDREVYAV LNGNSYQAVM GMSVDGREAD GTCVADTEDE  180
DEEDVNRGIE TGVVFDSGTH ARPETLISHL EKCAQGKIFR GPNAQVARES PRSNSPAPMP  240
LSGLIHAQVS FHPRLQQATN LVDCSTLPPT SFYLLFYTFK RYTV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167628.10.0trihelix transcription factor GT-2-like
TrEMBLA0A068VMR90.0A0A068VMR9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.13e-55Trihelix family protein