PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g33380

Common Name

GSCOC_T00010603001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 285aa MW: 32193.1 Da PI: 8.4804

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g33380	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	73	5.3e-23	40	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWtkqe+l Lie+++ e++ r+g+ + +p+W++v +++r +g++r+p+qC+++w+nl ++kki+++e++ ++e +s + + ++l+ Cc00_g33380 40 RWTKQETLILIEGKNIAESQGRKGRrsssifvtgQHEPKWDSVTSYCRLHGVNRGPVQCRKRWSNLVSDFKKIRTWESQVKEEGESFWMMRNDLR 134 8************9999999886667888888********************************************999999999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-7	30	107	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.027	33	106	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.37E-5	37	114	IPR009057	Homeodomain-like
Pfam	PF13837	5.4E-11	39	129	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MAPGPNDRLE KATSSASVLD EEHQAVERTN SENKSTRHPR WTKQETLILI EGKNIAESQG 60 RKGRRSSSIF VTGQHEPKWD SVTSYCRLHG VNRGPVQCRK RWSNLVSDFK KIRTWESQVK 120 EEGESFWMMR NDLRREKKLP GHFDRQVYAV LNGNSYQAVM GMSVDGREAD GTCVADTEDE 180 DEEDVNRGIE TGVVFDSGTH ARPETLISHL EKCAQGKIFR GPNVQVARES PRSNSPAPMP 240 LSGLIHAQVS FHPRLQQATN LVDCSKLPPT SFYLLFYTFK RYTV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027167628.1	0.0	trihelix transcription factor GT-2-like
TrEMBL	A0A068VQL1	0.0	A0A068VQL1_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-57	Trihelix family protein