PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g32910 | ||||||||
Common Name | GSCOC_T00007856001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | E2F/DP | ||||||||
Protein Properties | Length: 111aa MW: 12820.9 Da PI: 7.0396 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 39.2 | 1.1e-12 | 72 | 111 | 8 | 52 |
E2F_TDP 8 lltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNV 52 l t++f++l++++e+gi++lne+ak+L ++ ++RRiYDi+ V Cc00_g32910 72 LQTKNFVNLIKHAEDGILDLNEAAKTL---EM--SKRRIYDITSV 111 569************************...99..********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.2E-11 | 72 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 2.8E-9 | 73 | 111 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.09E-5 | 73 | 111 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MYGQLFMLFS CHAFNLFFHY VGVRKGICLE ETHTDQRSHL QLLCPMPKEE KQGAAAMTDL 60 WTSYFLIFLS GLQTKNFVNL IKHAEDGILD LNEAAKTLEM SKRRIYDITS V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A068VMP2 | 2e-78 | A0A068VMP2_COFCA; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 4e-16 | E2F transcription factor 1 |