PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g31390 | ||||||||
Common Name | GSCOC_T00012572001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 384aa MW: 43841 Da PI: 6.2701 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 77 | 2.9e-24 | 11 | 111 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ +++d Cc00_g31390 11 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSLLD 108 7**************999999964336777789999999**********************************************55*********** PP trihelix 84 qle 86 ++ Cc00_g31390 109 TMD 111 998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.1E-20 | 9 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010629 | Biological Process | negative regulation of gene expression | ||||
GO:1900037 | Biological Process | regulation of cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MRKISPWQRM KWTDNMVRLL IMVVFYIGDE VGSEGNDPAG KKKGAGGVLQ KKGKWKSVSR 60 AMMERGFFVS PQQCEDKFND LNKRYKRVND ILGKGTACRV VENQSLLDTM DHLSAKIKEE 120 VKKLLSSKHL FFREMCAYHN SCGHGGTGGA SSSGAAQQST EVGGVEPSSQ MQQQQRCLHT 180 SENASTPPNL ARCEVEGSKT TKGRSFEEDN DEDDDDDDDE EEYEDDVVEG GGSGCEHGHP 240 EEDDDTPDER CARKRRRKGI FLSPLVQQMS TELVKVLQDE SKNSAEKRQW IKNRLLQLEE 300 RHVGFQSEAF ELEKQRLKWV KFSSKKEREM ERDKLSNDRL RLENERMMLL IRQKELELLD 360 VYQQQQQQQH QSSRKSDPSS ITG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 252 | 256 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027069362.1 | 0.0 | uncharacterized protein LOC113694709 isoform X1 | ||||
TrEMBL | A0A068VQ04 | 0.0 | A0A068VQ04_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_006702m | 1e-156 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6710 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 9e-70 | sequence-specific DNA binding transcription factors |