PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g30020
Common NameGSCOC_T00005341001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 260aa    MW: 28543.2 Da    PI: 9.0426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g30020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08167207954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Cc00_g30020 167 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 207
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14162217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.52E-6181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048462Biological Processcarpel formation
GO:2000012Biological Processregulation of auxin polar transport
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDVDFNKSTP EDQMDLMLLM QMDKLSELTG GFADIHELPM MDFSTNQGSN NNNSSSGAVD  60
HNSHAPSSAF LNLPPSVSFT CSPGQLPQEP SSALPFLSNS SSGRWRNELA GGNGFATESQ  120
KRNSVAAMRE MIFRIAAMQP IHIDPESVKP PKRRNVKISK DPQSVAARHR RERISERIRI  180
LQRLVPGGTK MDTASMLDEA IHYVKFLKNQ VQSLERAAAN RPTGIGFPVP MSSGSYLPMA  240
TKGYHHQAAH QNVQHYADA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027090906.10.0transcription factor HEC2-like
TrEMBLA0A068VLN90.0A0A068VLN9_COFCA; Uncharacterized protein
STRINGVIT_18s0001g10400.t017e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.14e-42bHLH family protein