PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g24080
Common NameGSCOC_T00006235001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 285aa    MW: 31907.4 Da    PI: 7.5355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g24080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-11105150555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ + f  L  ++P +     kK++K ++L  +++Y+k+Lq
  Cc00_g24080 105 HIIAERKRREQLSQQFVALSAIVPGL-----KKMDKTSVLGDTIKYLKHLQ 150
                  899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.367100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.03E-16101166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-9105154No hitNo description
PfamPF000101.0E-8105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15105166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-12106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.987210284IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEPPQNVVER PSKHHKANNY LNNSSTLQAT NSCHEQVICT FGNSNVVPER NRQQSIMGTN  60
TGDDLVSEAL ISRASFTSLE EAVKGVHTTK KTSSRTRPPS QTYDHIIAER KRREQLSQQF  120
VALSAIVPGL KKMDKTSVLG DTIKYLKHLQ QREKELEEQA TKQTMESLVL VKKSQLLLED  180
EGESSDEQEG CCNEQPLPEI EAKMCDKHVL LRILCEKHRG VLVKILSEMD KLNLDVINTN  240
VAPFGSLALD ITIITEMKRE FNLSMKELVN SLASGLRRAT LQKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027098136.10.0transcription factor bHLH18-like
SwissprotQ9T0721e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A068VKD60.0A0A068VKD6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-45bHLH family protein