PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g22160
Common NameGSCOC_T00000943001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 556aa    MW: 63032.5 Da    PI: 5.946
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g22160genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK60.82.5e-19386433552
       RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  i+ e+l+++    ++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++
  Cc00_g22160 386 ITREVLEQNSTRRLEDAAKNIGVSRSTLKRICREYGINRWPPRKARKV 433
                  899*****************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151913.765369453IPR003035RWP-RK domain
PfamPF020424.5E-16386433IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.607.2E-4391423IPR009057Homeodomain-like
SuperFamilySSF542777.85E-14456547No hitNo description
Gene3DG3DSA:3.10.20.2405.6E-12464546No hitNo description
PROSITE profilePS5174513.932466548IPR000270PB1 domain
SMARTSM006661.9E-7466548IPR000270PB1 domain
PfamPF005647.7E-11467547IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MYLTTCDQPF AFQCSSPLDV KKVCEHRKHC LDYLIPVDDD DDGELIIGPP GRVFRSGFPE  60
YARNVGDYTS REYPQRDFAA ERFRDYWALP VYHHPTQDLP SGVLEIVASS YVFSNVLPEV  120
NLTTTRVSVA EVNSGEYLKY FISPSILHNL GWSFRLFILI LLSQTCTGHQ EEEIAIIHIV  180
SIVVSTIHKL PHREIWSASG EMLSSCDGDF IQKGQGVVGK AFSSKSACFC RDIRQLSITE  240
YPLVPIARRL KYSACFAVCL QSYCSNNCIY VLEFFLPTTL LNSLMETLKE RLGSSFKIAS  300
GQELGQKLTV EVIKVSPEDK FDSFEICNTT SSESTPGLVE EVSIAHDEPI VEDPLRDGAS  360
IEQRDNEVTN LEVQKPSWTL KSDLGITREV LEQNSTRRLE DAAKNIGVSR STLKRICREY  420
GINRWPPRKA RKVSQAFAVQ KTVQPSTEDT HEHHQSNATR LEDDNGMWVK AKYQGRMIKF  480
RLPFSASKIN LEENVAQRLN LAMGSFIIEY QDEDDDRIWI TCDGDLRTSM STLSSLGRTT  540
IKMYIVKDRP NRRDQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174639.10.0protein NLP6-like
TrEMBLA0A068VJG20.0A0A068VJG2_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.15e-48NIN like protein 7