PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc00_g21560

Common Name

GSCOC_T00000840001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 535aa MW: 57515.9 Da PI: 7.6871

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc00_g21560	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	179	238	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Cc00_g21560 179 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApNCPVRKQVQRCAEDMSILITTYEGTHNHP 238 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.2E-32	165	240	IPR003657	WRKY domain
SuperFamily	SSF118290	8.63E-28	171	240	IPR003657	WRKY domain
PROSITE profile	PS50811	28.461	174	240	IPR003657	WRKY domain
SMART	SM00774	3.0E-37	179	239	IPR003657	WRKY domain
Pfam	PF03106	3.1E-27	180	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MGEVMEENQR LRMCLDRAMK DYRALQMQFN DMVQQEPNKS AEPNKSSSTI TTHQETEEPE 60 LVSLSLGMSS SDGKKDDHFS GKNQGKEKVD KDGDHDKKVL ALGLDCKFEL PKDQENEPSP 120 NPSLEASSGE VKEEEGGEKW PPQKSLKNVV RSEEDEVSQQ NPAKRARVSV RVRCDTPTMN 180 DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPN CPVRKQVQRC AEDMSILITT YEGTHNHPLP 240 VAATAMASTT SAAASMLMSG STTSTSGLLP PSNFASANLN GLNFFLSDNS KPKPFYLPNS 300 SLSSSPSFPT ITLDLTTSSN ASSNLTKLGS FPPRSYSATR DLNFSSLESN ALPLSWSNGV 360 LSYGPQAQPY NKNQSISSLN FGRQPQETLY QSYSQKNHPI LNSSAQQSLP AETIAAATKA 420 ITSDPSFQSA LAAALTSIIG SGTGGTTGAP VSQTSADKSG QNLKLNDQSF PILSSFPSST 480 STVNKCAPTF LNSSKPPSSA NSQPGSLMFL SPSLSFPTPS NKSTSPGDNR DRIS*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MGEVMEENQR LRMCLDRAMK DYRALQMQFN DMVQQEPNKS AEPNKSSSTI TTHQETEEPE  60
LVSLSLGMSS SDGKKDDHFS GKNQGKEKVD KDGDHDKKVL ALGLDCKFEL PKDQENEPSP  120
NPSLEASSGE VKEEEGGEKW PPQKSLKNVV RSEEDEVSQQ NPAKRARVSV RVRCDTPTMN  180
DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPN CPVRKQVQRC AEDMSILITT YEGTHNHPLP  240
VAATAMASTT SAAASMLMSG STTSTSGLLP PSNFASANLN GLNFFLSDNS KPKPFYLPNS  300
SLSSSPSFPT ITLDLTTSSN ASSNLTKLGS FPPRSYSATR DLNFSSLESN ALPLSWSNGV  360
LSYGPQAQPY NKNQSISSLN FGRQPQETLY QSYSQKNHPI LNSSAQQSLP AETIAAATKA  420
ITSDPSFQSA LAAALTSIIG SGTGGTTGAP VSQTSADKSG QNLKLNDQSF PILSSFPSST  480
STVNKCAPTF LNSSKPPSSA NSQPGSLMFL SPSLSFPTPS NKSTSPGDNR DRIS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	166	240	1	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027121702.1	0.0	probable WRKY transcription factor 61
Swissprot	A0A3Q7GFB5	1e-144	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A068VJ04	0.0	A0A068VJ04_COFCA; Uncharacterized protein
STRING	XP_010256554.1	1e-177	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	4e-59	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]