PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g21210
Common NameGSCOC_T00009603001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 287aa    MW: 32663.3 Da    PI: 8.307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g21210genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-18754148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd  l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
      Cc00_g21210  7 RGPWTVEEDFTLINYIAHHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 54
                     89********************************************97 PP
2Myb_DNA-binding51.52.3e-1660103146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Cc00_g21210  60 RGNITLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 103
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.378258IPR017930Myb domain
SuperFamilySSF466894.87E-314101IPR009057Homeodomain-like
SMARTSM007173.1E-15656IPR001005SANT/Myb domain
PfamPF002491.6E-16754IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-22861IPR009057Homeodomain-like
CDDcd001679.86E-12954No hitNo description
PROSITE profilePS5129418.70759109IPR017930Myb domain
SMARTSM007171.3E-1459107IPR001005SANT/Myb domain
PfamPF002494.6E-1560103IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2362108IPR009057Homeodomain-like
CDDcd001673.11E-780103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MMMDLRRGPW TVEEDFTLIN YIAHHGEGRW NSLARCAGLK RTGKSCRLRW LNYLRPDVRR  60
GNITLEEQLL ILELHSRWGN RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK QLKCDVNSKQ  120
FKDTMRYLWM PRLVERIQAA AAAGANSSTA ARATAATATT TSNSNYHQGN TSMVADVGSG  180
GQVILPQAST YGGHSFTAQF SPVSDLTDCY NYPVKQSNNQ DYYQANNQLS YGETLTSPTG  240
YFNQALDFHL MEQNNAWMDG GDVSDNLWND EDAWFFQQQL NSNTFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-25410124120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027121075.10.0transcription factor MYB108-like
SwissprotQ9FGY34e-92MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A068VJL20.0A0A068VJL2_COFCA; Uncharacterized protein
STRINGPOPTR_0008s10080.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.18e-89myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]