PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g20610
Common NameGSCOC_T00013534001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 210aa    MW: 23736.2 Da    PI: 10.4797
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g20610genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind104.87e-33471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+i++++e++++isws++g+sf+v+d+++fa +vL kyF+h+nfaSF+ QLn+YgF+k++ ++          eF++ +F+kgkk+ l+kik
   Cc00_g20610  47 FLLKVYDIVKNPETESIISWSSSGTSFIVWDPHRFAAEVLGKYFRHNNFASFICQLNTYGFRKINWDR---------LEFQNAWFQKGKKSWLKKIK 134
                   9****************************************************************999.........78****************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+ +
   Cc00_g20610 135 RRIQ 138
                   *976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.0E-4443136IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.99E-3143136IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.0E-3344136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-2947136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-164770IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-168597IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-1698110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGTDVSESNS NAIVTAAAAV SATPLAKEGY ANGASSSSSR VRAPPPFLLK VYDIVKNPET  60
ESIISWSSSG TSFIVWDPHR FAAEVLGKYF RHNNFASFIC QLNTYGFRKI NWDRLEFQNA  120
WFQKGKKSWL KKIKRRIQGT QNAHLCKLLG TEGQLSLSGE QKKFESLMQE HDALKVEIMK  180
LKDREENQRR KWKSLRKKPS VLHPSCKIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-254513727130Heat shock factor protein 1
5d5v_B1e-254513727130Heat shock factor protein 1
5d5v_D1e-254513727130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKKIKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174269.11e-103heat stress transcription factor A-2d-like
TrEMBLA0A068VJG11e-154A0A068VJG1_COFCA; Uncharacterized protein
STRINGevm.model.supercontig_28.1625e-41(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1603026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-31heat shock transcription factor A2