PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g16600
Common NameGSCOC_T00013783001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 401aa    MW: 44800.3 Da    PI: 8.0952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g16600genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-141462148
                     TSSS-HHHHHHHHHHHHH.TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkq.lGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l+ +++q +G  +W++ +++ g+ R++k+c++rw +yl
      Cc00_g16600 14 KGTWTPEEDQKLLSYIEQqHGHSSWRALPAKAGLERCGKSCRLRWTNYL 62
                     799*************8527777************************97 PP

2Myb_DNA-binding54.43e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
      Cc00_g16600  68 RGKFSSQEDQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.101962IPR017930Myb domain
SuperFamilySSF466895.87E-2711109IPR009057Homeodomain-like
SMARTSM007172.7E-91364IPR001005SANT/Myb domain
PfamPF002498.0E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-221569IPR009057Homeodomain-like
CDDcd001674.26E-91662No hitNo description
PROSITE profilePS5129426.55663117IPR017930Myb domain
SMARTSM007176.0E-1767115IPR001005SANT/Myb domain
PfamPF002492.7E-1668113IPR001005SANT/Myb domain
CDDcd001675.83E-1270113No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2770117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGRSPCCEKL GLRKGTWTPE EDQKLLSYIE QQHGHSSWRA LPAKAGLERC GKSCRLRWTN  60
YLRPDIKRGK FSSQEDQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLTKM  120
GIDPSTHRPK TNALGSAHQK DTANLSHMAQ WESARLEAES RLVRESKLLS LSTAFNHSHL  180
SPPASAQLPL AKALASPLVT PLEPMVQKHY FHCLDILKAW QRTWTTTKNA NGFFSTAIGS  240
LQSPTSTLHF SDNTFAMSSA ARLTGENLPF NSTINCEARD MKATGTSTWQ YLDTPKNSDP  300
LAVTGEKMES TTGNMMQLNH DVNVQCDFDP VGGAYTMEFS LRSPGFMEGF ADADIDDSNN  360
NPTGSYQSLG YRWGGDLEDN QKYWNNIVNE EISALGSPFF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25121175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096336.10.0transcription factor MYB106-like
SwissprotQ9LE633e-99MY106_ARATH; Transcription factor MYB106
TrEMBLA0A068VKQ30.0A0A068VKQ3_COFCA; Uncharacterized protein
STRINGEOY018541e-126(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-98myb domain protein 106