PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g16600 | ||||||||
Common Name | GSCOC_T00013783001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 401aa MW: 44800.3 Da PI: 8.0952 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.4 | 3.9e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHH.TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkq.lGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++l+ +++q +G +W++ +++ g+ R++k+c++rw +yl Cc00_g16600 14 KGTWTPEEDQKLLSYIEQqHGHSSWRALPAKAGLERCGKSCRLRWTNYL 62 799*************8527777************************97 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 3e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l Cc00_g16600 68 RGKFSSQEDQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 113 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.101 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.87E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.26E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.556 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-16 | 68 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.83E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-27 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGRSPCCEKL GLRKGTWTPE EDQKLLSYIE QQHGHSSWRA LPAKAGLERC GKSCRLRWTN 60 YLRPDIKRGK FSSQEDQTII QLHALLGNRW SAIATHLPKR TDNEIKNYWN THLKKRLTKM 120 GIDPSTHRPK TNALGSAHQK DTANLSHMAQ WESARLEAES RLVRESKLLS LSTAFNHSHL 180 SPPASAQLPL AKALASPLVT PLEPMVQKHY FHCLDILKAW QRTWTTTKNA NGFFSTAIGS 240 LQSPTSTLHF SDNTFAMSSA ARLTGENLPF NSTINCEARD MKATGTSTWQ YLDTPKNSDP 300 LAVTGEKMES TTGNMMQLNH DVNVQCDFDP VGGAYTMEFS LRSPGFMEGF ADADIDDSNN 360 NPTGSYQSLG YRWGGDLEDN QKYWNNIVNE EISALGSPFF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 12 | 117 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027096336.1 | 0.0 | transcription factor MYB106-like | ||||
Swissprot | Q9LE63 | 3e-99 | MY106_ARATH; Transcription factor MYB106 | ||||
TrEMBL | A0A068VKQ3 | 0.0 | A0A068VKQ3_COFCA; Uncharacterized protein | ||||
STRING | EOY01854 | 1e-126 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01140.1 | 1e-98 | myb domain protein 106 |