PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g15080
Common NameGSCOC_T00008519001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 162aa    MW: 18052.1 Da    PI: 7.7265
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g15080genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.4e-133290563
                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                 ++ +r+++NRe+ArrsR RK++ ++ L   v++L +eN + +  ++  ++++ ++++e+
  Cc00_g15080 32 RKRKRMISNRESARRSRMRKQKHLDDLMAQVAQLRKENNQIITSMNVTTQQYLNVEAEN 90
                 6789**************************************99999999998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.5E-182892IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6113093IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1709.9E-1130107No hitNo description
PfamPF001705.1E-103279IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-123284No hitNo description
CDDcd147021.48E-183383No hitNo description
PROSITE patternPS0003603550IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MASSSGSGTS SGSSGFQNSG SEEDLQHLMD QRKRKRMISN RESARRSRMR KQKHLDDLMA  60
QVAQLRKENN QIITSMNVTT QQYLNVEAEN SVLRAQVAEL SHRLQSLNEI IEFLNVCTGG  120
LAAEGSYGFG ESADGFLNNS WNHLYLNQQQ PLMPSANMLH Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13152RKRKRMISNRESARRSRMRKQK
24451RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105717.11e-116bZIP transcription factor 44-like
SwissprotC0Z2L54e-50BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A068VHK31e-115A0A068VHK3_COFCA; Uncharacterized protein
STRINGXP_008236935.16e-65(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53724123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.18e-48G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]