PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g14640
Common NameGSCOC_T00012542001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 360aa    MW: 37885.9 Da    PI: 9.5604
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g14640genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.42.1e-4357132176
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                  +CqvegC+ dls+ak y++rhkvC +hsk+p+v+v+gl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  Cc00_g14640  57 RCQVEGCKLDLSDAKPYYSRHKVCGAHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 132
                  6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-3652119IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.25755132IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.62E-4156136IPR004333Transcription factor, SBP-box
PfamPF031108.7E-3358131IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELASGSSSS SPSSSDSLNG LKFGKKIYFE AASGRPPPAP AKKGRSGVAP GGGQPPRCQV  60
EGCKLDLSDA KPYYSRHKVC GAHSKSPTVI VAGLQQRFCQ QCSRFHQLPE FDQGKRSCRR  120
RLAGHNERRR KPPPGSLLSS RYGSLSSSFF ESSSRSGGFL MDFSAYPALS GRDSWPNGRV  180
SVRATGNQPT GTGKFLQHPW QGNPENPPSE LLLHSSAGRT TYVGPAISSG GCLAGVSDSS  240
RALSLLSTHS WGSGNQSSSL GANGLANVNG MPCGVIQASG SHGEAIDHFS SPMWGFKGGE  300
NNSGSNEIPP ELGLGQLSQP ASSQYSGDLD ASSQNGREYL GLEHSRGYNS SIQHMHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-32581311184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027068041.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0576e-64SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A068VGR60.0A0A068VGR6_COFCA; Uncharacterized protein
STRINGVIT_08s0007g06270.t011e-150(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45712241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-54squamosa promoter binding protein-like 9