PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g12270
Common NameGSCOC_T00008605001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 629aa    MW: 68313.5 Da    PI: 5.5246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g12270genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11440482754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Cc00_g12270 440 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 482
                  79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-16436502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14439488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9439482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-16440496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.83E-13440486No hitNo description
CDDcd048736.32E-7557617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MMDQQFSCMN VTSQATSVSL LQIKDVSLWK KPFPFFLSFI CQGKKKKLER NMLSRVNSMV  60
WMDDKDQETA SWDHHPSTMN NNSNNEQNGV LENREDMEMG SIPTFKSMLG VEDEDWYLTT  120
TNHAETNNPN NNNAGTMQSS HLDMRDITFS ANFAEADHQN LILQAVDSSA SCSPSPASVF  180
NNLDPSQVHH YFLQPPPRSN LLSGLNTLST TQLDNGSFDL GCESGFLESH QGLGGFSTRG  240
GVGVLGVGFN DLSSQTQLGS PNLNSGSQFS TANLLQMPQN NGGFGPLGFG ECSGNVNSLF  300
LNRSKLLQPL DNFTSTGAQP TLFQKRAALR KNLACSSSNL GVLGGEIGQS SGNSESYDKK  360
KEVGEASGLK RKGSDFDDLE DVSIDGSNLN YDSDDLLENH SKVVGEGVKN GGNSSNANST  420
VTGGEDQKGK KKGLPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIEYLK  480
ELLQKINDLQ NELESTPAAS ALTPTTPFYP LTPTASALPC RIKEELCPSA FASPLSSPTG  540
QPARIEVRLR EGRAVNIHMF CGRRPGLLLS TMRALDSLGL DIQQAVISCF NGFALDIFRA  600
EQCNEGQDIP PEHIKAVLLD SAGFQGIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-14435492663Transcription factor MYC2
5gnj_B6e-14435492663Transcription factor MYC2
5gnj_E6e-14435492663Transcription factor MYC2
5gnj_F6e-14435492663Transcription factor MYC2
5gnj_G6e-14435492663Transcription factor MYC2
5gnj_I6e-14435492663Transcription factor MYC2
5gnj_M6e-14435492663Transcription factor MYC2
5gnj_N6e-14435492663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1429447KKKGLPAKNLMAERRRRKK
2441448ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122788.10.0transcription factor ICE1-like
RefseqXP_027122789.10.0transcription factor ICE1-like
TrEMBLA0A068VGT40.0A0A068VGT4_COFCA; Uncharacterized protein
STRINGXP_009769541.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27032452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-115bHLH family protein