PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g12150
Common NameGSCOC_T00012513001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 638aa    MW: 71502.5 Da    PI: 8.5725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g12150genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding62.58.5e-2056102148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rgrWT+eEd++l dav+++ g++Wk+Ia++++  Rt+ qc +rwqk+l
      Cc00_g12150  56 RGRWTEEEDKILQDAVQRFNGKCWKKIAKCLP-DRTDVQCLHRWQKVL 102
                      89******************************.************986 PP
2Myb_DNA-binding58.51.5e-18108154148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+l+v++v + G++ W+ Ia+ ++ gR +kqc++rw+++l
      Cc00_g12150 108 KGPWTKEEDDLIVELVGKQGNKKWSEIAKQLP-GRIGKQCRERWHNHL 154
                      79******************************.*************97 PP
3Myb_DNA-binding32.32.3e-10160192135
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgR 35 
                      +++WT eE+++l++a+  +G++ W+ Ia+++  gR
      Cc00_g12150 160 KNAWTREEELILIEAHSAYGNR-WAEIAKCLS-GR 192
                      689*******************.*******99.87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.14251102IPR017930Myb domain
SuperFamilySSF466893.3E-1854115IPR009057Homeodomain-like
SMARTSM007171.4E-1655104IPR001005SANT/Myb domain
PfamPF002497.4E-1756102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2557119IPR009057Homeodomain-like
CDDcd001672.78E-1458102No hitNo description
PROSITE profilePS5129430.865103158IPR017930Myb domain
SuperFamilySSF466892.85E-26105193IPR009057Homeodomain-like
SMARTSM007177.1E-17107156IPR001005SANT/Myb domain
CDDcd001671.36E-14110154No hitNo description
PfamPF139211.2E-17111168No hitNo description
Gene3DG3DSA:1.10.10.607.2E-27120161IPR009057Homeodomain-like
PROSITE profilePS512949.168159234IPR017930Myb domain
SMARTSM007174.5E-11159232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-20162234IPR009057Homeodomain-like
CDDcd001672.13E-7162227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MEKDQGSEAE GANGEKDNVS SSDVAMDGNG TGESNDPKHH AACCRRVSGP ARRSSRGRWT  60
EEEDKILQDA VQRFNGKCWK KIAKCLPDRT DVQCLHRWQK VLNPELVKGP WTKEEDDLIV  120
ELVGKQGNKK WSEIAKQLPG RIGKQCRERW HNHLNPEINK NAWTREEELI LIEAHSAYGN  180
RWAEIAKCLS GRYCNVTALV LDWMHLYSYV SVWARFRSEN SIKNHWNCSL KKKLEQNSSY  240
SVFDHPEFAD PTPCSSKTEV GYGGDLMVKQ SSGAGLLAIQ NMNSEAISDA CSLDLNLGLP  300
NGRDSYLQDS KRENCRHPSR QASNSIEPSS PACTEIIQNQ DKGGHAILGD HYHIIPRLSK  360
ISSNGFVTEH VNAQSTCYKD GHLMNCPSQG SPCLHLHQHL KQAWGADGDN NTIVIGGNVF  420
AVSSDMKYGC PLSRDCRDFS YMGHSKSSHS IVPKDVVSEH STISRMYKNF VGGSYYGLCY  480
EPLQEKDLKV FLSTGRFPST DSYIRQPSTS TTLMKPYILE KRSYVVSSTK SILRRAAMTF  540
KNTPSIIRKR KFPSSFQASN SKNMDKFLTT VEGLDSYNER LPGSHEFPPA GGDNQLPLLR  600
ELYASQRMRK LKISSGISSV GKCLKDAFDD VWDKRKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-59562346159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-59562346159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109722.10.0uncharacterized protein LOC113729666
TrEMBLA0A068VGP70.0A0A068VGP7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103932025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.24e-78myb domain protein 3r-4