PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g11590
Common NameGSCOC_T00007371001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 316aa    MW: 35622.5 Da    PI: 6.3068
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g11590genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.5e-192572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++ +G g+W++ a++ g++Rt+k+c++rw++yl
      Cc00_g11590 25 RGPWTVEEDSLLVHYIAAHGEGRWNLLAKRSGLNRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding53.45.9e-1778121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
      Cc00_g11590  78 RGNLSPEEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 121
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4252072IPR017930Myb domain
SuperFamilySSF466892.95E-3123119IPR009057Homeodomain-like
SMARTSM007178.6E-172474IPR001005SANT/Myb domain
PfamPF002495.0E-172572IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-232679IPR009057Homeodomain-like
CDDcd001673.12E-122772No hitNo description
PROSITE profilePS5129425.88973127IPR017930Myb domain
SMARTSM007171.4E-1577125IPR001005SANT/Myb domain
PfamPF002496.3E-1678121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-2480126IPR009057Homeodomain-like
CDDcd001674.82E-1282121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MCSLSKSTTT SSCSDDDAAG GELRRGPWTV EEDSLLVHYI AAHGEGRWNL LAKRSGLNRT  60
GKSCRLRWLN YLKPDVKRGN LSPEEQLLIL ELHSKWGNRW SKIAQHLPGR TDNEIKNYWR  120
TRVQKQARHL KIDSNSSEFQ ELVRRVWIPR LLQKVQGNIA YWDSSEHDNL AEIQAAVSNS  180
MAAKQPQQVP YSFPDSHQRN MISSSPSSMS SSESTNISPV PQFSEYIENP FYDMAPNNSY  240
GHSQNECYNV DSTSYQDMEN LSSAAPVTAM GGSTGPAGDN YCAQNNWLSD DLGYCLWNMD  300
DLCQLKQSQE RCTQI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2511271128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125302.10.0transcription factor MYB62-like
TrEMBLA0A068VFY20.0A0A068VFY2_COFCA; Uncharacterized protein
STRINGVIT_17s0000g03560.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.12e-78myb domain protein 116