PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g10740
Common NameGSCOC_T00009008001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Nin-like
Protein Properties Length: 297aa    MW: 33545.4 Da    PI: 5.4413
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g10740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK62.76.5e-20129176552
       RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  i+ e+l+++   +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++
  Cc00_g10740 129 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKARKI 176
                  899*****************************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151914.186112196IPR003035RWP-RK domain
PfamPF020421.0E-16129176IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.608.1E-4135165IPR009057Homeodomain-like
SuperFamilySSF542778.5E-15200288No hitNo description
SMARTSM006661.9E-12209291IPR000270PB1 domain
PROSITE profilePS5174517.288209291IPR000270PB1 domain
PfamPF005641.0E-14210290IPR000270PB1 domain
CDDcd059924.95E-15212288No hitNo description
Gene3DG3DSA:3.10.20.2401.4E-12212290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMQLDSSSQQ VDAANAYING VHGQQSEIVG CPPRPEHTQG FDNISYQELN LAGVDVAHNS  60
TNGIYEQQNG IVRSSTGQVL MQNMVSIEHD EPIVEDPQRD GASIEQGDNE VTNLKVQKPS  120
CTLKSDLGIT REVLEQNSTR KLEDAAKNIG VSRSTLKRIC REYGIHRWPP RKARKINQAF  180
AEQKIVQHST EDTHEPHQSG AARLEDDNGM WVKVEYQGFM IKFRLPFSAR KIDLEEKVAQ  240
RLNLPVGSFK IEYQDEDDDR IRITCDEDLR TFMSSLSSLG RTTIKMYIVE DSPNRR*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027174643.10.0protein NLP7-like
TrEMBLA0A068VG280.0A0A068VG28_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4897426
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.23e-14Nin-like family protein