PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g08580
Common NameGSCOC_T00005646001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 344aa    MW: 38798.3 Da    PI: 6.0521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g08580genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS231.73.4e-71222921280
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++ Ll  A  v+++d e a   L+ l +++  +gd++qR+aayf+ +L arl+   s  y+ +  ++t+    +ee+ a++ f++vsP+++f+h+ta
  Cc00_g08580  22 LIHSLLISASSVDENDIESAVDNLCDLYQNVCLSGDSLQRVAAYFADGLVARLLTRKSPFYDMIMKTPTP----EEEFLAFTEFYKVSPFYQFAHFTA 115
                  57899999***********************************************9*****999988887....688889999*************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlvakrled 188
                  Nq I e +e+e     + +H+iDfdis+G+QWp+L+q+L++ +  ++  sl+iTg+g+    s eel+et+ rL +fA++++ ++fef+ l    l  
  Cc00_g08580 116 NQSIIETFEKEepnnsRVLHVIDFDISYGFQWPSLIQSLSEIAtaNKRVSLKITGFGR----SMEELQETETRLVSFAKSFRsLNFEFQGL----LRG 205
                  **********989885556*********************877657788*********....******************9559******8....455 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                    l +Lr k+ E+++Vnlvl+l +l   +vs   +++e+Lk+v+ ++P +vv+ve+e +++ ++Fl rf+e+l+y++a+fdsl+  lp +++
  Cc00_g08580 206 SMLGSLRRKKSETVVVNLVLHLNTLN--NVS---KISETLKCVNLINPSIVVMVEHEGSRTPQNFLSRFMESLHYFAAMFDSLDDCLPVDTK 292
                  55699*****************9997..333...35589*********************************************99998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.3291343IPR005202Transcription factor GRAS
PfamPF035141.2E-6822292IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MREQMFNQKK DGGVEDGKGL HLIHSLLISA SSVDENDIES AVDNLCDLYQ NVCLSGDSLQ  60
RVAAYFADGL VARLLTRKSP FYDMIMKTPT PEEEFLAFTE FYKVSPFYQF AHFTANQSII  120
ETFEKEEPNN SRVLHVIDFD ISYGFQWPSL IQSLSEIATA NKRVSLKITG FGRSMEELQE  180
TETRLVSFAK SFRSLNFEFQ GLLRGSMLGS LRRKKSETVV VNLVLHLNTL NNVSKISETL  240
KCVNLINPSI VVMVEHEGSR TPQNFLSRFM ESLHYFAAMF DSLDDCLPVD TKLLLKIRSH  300
CSPIQFDGGN GGFRIFEKAD GKAISLGWQD RCLITASAWH CVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3923394378Protein SCARECROW
5b3h_A1e-3823393377Protein SCARECROW
5b3h_D1e-3823393377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027071949.10.0protein SCARECROW 1-like
TrEMBLA0A068VEP30.0A0A068VEP3_COFCA; Uncharacterized protein
STRINGVIT_18s0076g00200.t011e-169(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123541823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.14e-35GRAS family protein