PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g08580 | ||||||||
Common Name | GSCOC_T00005646001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 344aa MW: 38798.3 Da PI: 6.0521 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 231.7 | 3.4e-71 | 22 | 292 | 1 | 280 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++ Ll A v+++d e a L+ l +++ +gd++qR+aayf+ +L arl+ s y+ + ++t+ +ee+ a++ f++vsP+++f+h+ta Cc00_g08580 22 LIHSLLISASSVDENDIESAVDNLCDLYQNVCLSGDSLQRVAAYFADGLVARLLTRKSPFYDMIMKTPTP----EEEFLAFTEFYKVSPFYQFAHFTA 115 57899999***********************************************9*****999988887....688889999*************** PP GRAS 99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlvakrled 188 Nq I e +e+e + +H+iDfdis+G+QWp+L+q+L++ + ++ sl+iTg+g+ s eel+et+ rL +fA++++ ++fef+ l l Cc00_g08580 116 NQSIIETFEKEepnnsRVLHVIDFDISYGFQWPSLIQSLSEIAtaNKRVSLKITGFGR----SMEELQETETRLVSFAKSFRsLNFEFQGL----LRG 205 **********989885556*********************877657788*********....******************9559******8....455 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 l +Lr k+ E+++Vnlvl+l +l +vs +++e+Lk+v+ ++P +vv+ve+e +++ ++Fl rf+e+l+y++a+fdsl+ lp +++ Cc00_g08580 206 SMLGSLRRKKSETVVVNLVLHLNTLN--NVS---KISETLKCVNLINPSIVVMVEHEGSRTPQNFLSRFMESLHYFAAMFDSLDDCLPVDTK 292 55699*****************9997..333...35589*********************************************99998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.329 | 1 | 343 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-68 | 22 | 292 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MREQMFNQKK DGGVEDGKGL HLIHSLLISA SSVDENDIES AVDNLCDLYQ NVCLSGDSLQ 60 RVAAYFADGL VARLLTRKSP FYDMIMKTPT PEEEFLAFTE FYKVSPFYQF AHFTANQSII 120 ETFEKEEPNN SRVLHVIDFD ISYGFQWPSL IQSLSEIATA NKRVSLKITG FGRSMEELQE 180 TETRLVSFAK SFRSLNFEFQ GLLRGSMLGS LRRKKSETVV VNLVLHLNTL NNVSKISETL 240 KCVNLINPSI VVMVEHEGSR TPQNFLSRFM ESLHYFAAMF DSLDDCLPVD TKLLLKIRSH 300 CSPIQFDGGN GGFRIFEKAD GKAISLGWQD RCLITASAWH CVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-39 | 2 | 339 | 4 | 378 | Protein SCARECROW |
5b3h_A | 1e-38 | 2 | 339 | 3 | 377 | Protein SCARECROW |
5b3h_D | 1e-38 | 2 | 339 | 3 | 377 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027071949.1 | 0.0 | protein SCARECROW 1-like | ||||
TrEMBL | A0A068VEP3 | 0.0 | A0A068VEP3_COFCA; Uncharacterized protein | ||||
STRING | VIT_18s0076g00200.t01 | 1e-169 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12354 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 4e-35 | GRAS family protein |