PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g08300 | ||||||||
Common Name | GSCOC_T00004570001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19430.5 Da PI: 10.3106 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.9 | 2.6e-18 | 18 | 63 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e + n +vtfskRrng++ KA+EL++L++aeva+++fs+ + y + Cc00_g08300 18 EKNNNLHVTFSKRRNGLFMKANELCTLTGAEVALLVFSPGKRAYSF 63 567789********************************98888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.848 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-21 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-21 | 8 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-13 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-20 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-13 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-13 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAKKLTRGHQ KVPIVEMEKN NNLHVTFSKR RNGLFMKANE LCTLTGAEVA LLVFSPGKRA 60 YSFGHSSFES VIDKFVGNKP SPSVHGGTNH HVANHHGDNI DELNNKIIDL KTQLKANKKL 120 EEVLGQMIKE GQHKNWWQAP IGEMNLDQLL MMKKALEELK KKVQDELKRQ I* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027171141.1 | 1e-123 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A068VEW2 | 1e-122 | A0A068VEW2_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-37 | AGAMOUS-like 62 |