PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc00_g07530 | ||||||||
Common Name | GSCOC_T00005547001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 28796.4 Da PI: 4.9357 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.5e-17 | 115 | 162 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 ++kGVr+++ g+WvAeIrdp + ++++lg+f +aeeAa+a+++ ++ Cc00_g07530 115 HFKGVRQRS-AGKWVAEIRDP-----HqgRSVWLGTFTSAEEAARAYDRKCIQF 162 69****999.8*********7.....336*******************876555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.9E-11 | 115 | 163 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.64E-27 | 115 | 174 | No hit | No description |
PROSITE profile | PS51032 | 20.323 | 115 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-32 | 115 | 178 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 115 | 173 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-28 | 115 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-7 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.9E-7 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MYRFSDQTSE ELFRDEVDKC IVSALQHVIS NTEAAAPPTA PAHQQQPTVM PEFEGVTSLS 60 QSSATASSGL GSSSTGTMME DNDDQSRNDE KQKQKNKKKK KKKREVERDG EKRVHFKGVR 120 QRSAGKWVAE IRDPHQGRSV WLGTFTSAEE AARAYDRKCI QFRGDRAKTN FPSSDYANAN 180 DDQPSGSQQQ QQQQDAPPPA AALLSVNAPV EYTSAVTTNS TTTAADAGGT SWEEDEGFWD 240 VFQILSDTDW RMMDSPPPSG P* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 9e-16 | 115 | 172 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 103 | KKKKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027127802.1 | 1e-151 | ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_027171674.1 | 1e-151 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A068VHB2 | 0.0 | A0A068VHB2_COFCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 1e-21 | related to AP2 6l |