PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc00_g06830
Common NameGSCOC_T00007413001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 562aa    MW: 61517.2 Da    PI: 7.2506
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc00_g06830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.7e-29280338160
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  ldDgynWrKYGqK vkg+ f rsYY+Ct+++C++kk+ver + d+++++i+Y g+H+h+k
  Cc00_g06830 280 LDDGYNWRKYGQKLVKGNVFVRSYYKCTYSTCRAKKQVERLH-DGRLTDIKYIGKHEHPK 338
                  59****************************************.***************85 PP
2WRKY105.33.2e-33457515159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK vkg+++prsYYrC+ agC+vkk+vers++dpkvv++tYeg+H+h+
  Cc00_g06830 457 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNAGCTVKKHVERSSHDPKVVITTYEGKHDHD 515
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-25275338IPR003657WRKY domain
PROSITE profilePS5081121.092275339IPR003657WRKY domain
SuperFamilySSF1182905.23E-23277338IPR003657WRKY domain
SMARTSM007741.3E-31280338IPR003657WRKY domain
PfamPF031063.1E-22281337IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-34443517IPR003657WRKY domain
SuperFamilySSF1182902.88E-29449517IPR003657WRKY domain
PROSITE profilePS5081136.391452517IPR003657WRKY domain
SMARTSM007741.9E-38457516IPR003657WRKY domain
PfamPF031066.2E-26458514IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MQPRDSPHNG VPVSPSNSGE VVSCVVLKIE SGSLQQKQIS ASESCEPEAH KVPPLVKNEK  60
DELNQWQSHG AGNHSTAYGE TEVLDSGKDV AISNQVSIVP KKELVSDGQL HASVSSKQLI  120
PENGNRASQF NQVSVQPKEE LGRSEQNLSP HTGSNTPMSG EKLIPESGTH VSQFNHVSII  180
TKMDPDGPEQ EQGTDAGKDA SLPCEGGGTD SSVLEKSLQH MQNTNMRVCT SSSDQEKITY  240
SAKPEKVLYK LQPRRNPDSG VHATQSEQGS NSPRIREKAL DDGYNWRKYG QKLVKGNVFV  300
RSYYKCTYST CRAKKQVERL HDGRLTDIKY IGKHEHPKLQ SSPQCTAFVS PSEVSKADMP  360
AIATSEAEDE LVVAHNDKPQ PIDPAETPRE LAATASNNST GKAVPQLHNP RDDIDNDISP  420
TSKRQKRETC DVHNNQVKKT HCESRQVVHM MSEVDIVNDG YRWRKYGQKL VKGNPNPRSY  480
YRCSNAGCTV KKHVERSSHD PKVVITTYEG KHDHDMPASR TVGHSATESG TNGTTMKGEA  540
KSEIGEHNAV GMDLIVKIGA N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-35280517174WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027065033.10.0WRKY transcription factor 1-like isoform X1
TrEMBLA0A068VGU70.0A0A068VGU7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-74zinc-dependent activator protein-1